DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CPH
CGC
Degron:
VSTTS
Uniprot ID:
Q5SW79
Source protein:
Centrosomal protein of 170 kDa
Source gene:
CEP170
Class:
DEG_SPOP_SBC_1
Location:
1128:1132
E3 ligase:
SPOP
DEGRON score:
0.9947
ASA_SCORE:
95.62
COIL:
0.9508
CONS_SCORE:
0.4667
DSS_SCORE:
0.6592
HELIX:
0.025
FCONS_SCORE:
1.055
RIG_SCORE:
0.6151
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1133C
TCGA-4Z-AA7M
BLCA
TCGA
VSTTS
DEG_SPOP_SBC_1
0.75
p.S1133Y
TCGA-AP-A1DV
UCEC
TCGA
VSTTS
DEG_SPOP_SBC_1
0.75
p.S1133Y
TCGA-AX-A2HC
UCEC
TCGA
VSTTS
DEG_SPOP_SBC_1
0.75
p.A1119V
TCGA-AX-A0J0
UCEC
TCGA
VSTTS
DEG_SPOP_SBC_1
0.0833
p.T1130A
TCGA-DU-6392
LGG
TCGA
VSTTS
DEG_SPOP_SBC_1
0.7139
p.D1118A
TCGA-DU-6392
LGG
TCGA
VSTTS
DEG_SPOP_SBC_1
0.0556
p.A1119D
TCGA-EJ-5518
PRAD
TCGA
VSTTS
DEG_SPOP_SBC_1
0.0833
p.R1142C
TCGA-EY-A1GI
UCEC
TCGA
VSTTS
DEG_SPOP_SBC_1
0.0556
p.R1142C
SIDM00217
Colorectal Carcinoma
GDSC
VSTTS
DEG_SPOP_SBC_1
0.0556
p.R1142C
ACH-000999
Colon/Colorectal Cancer
CCLE
VSTTS
DEG_SPOP_SBC_1
0.0556
p.R1142C
SNU-1040
large_intestine
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.0556
p.A1126S
DO222849
COCA
ICGC
VSTTS
DEG_SPOP_SBC_1
0.2778
p.A1126S
DO228464
LICA
ICGC
VSTTS
DEG_SPOP_SBC_1
0.2778
p.A1126S
DO231075
LUSC
ICGC
VSTTS
DEG_SPOP_SBC_1
0.2778
p.A1126S
KU-19-19
urinary_tract
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.2778
p.A1126S
NCI-SNU-5
stomach
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.2778
p.A1126S
SNU-1040
large_intestine
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.2778
p.A1126S
MRK-nu-1
breast
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.2778
p.A1126S
SNU-C5
large_intestine
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.2778
p.T1120I
DO32576
OV
ICGC
VSTTS
DEG_SPOP_SBC_1
0.1111
p.K1136N
SIDM00216
Colorectal Carcinoma
GDSC
VSTTS
DEG_SPOP_SBC_1
0.3333
p.K1136N
ACH-000989
Colon/Colorectal Cancer
CCLE
VSTTS
DEG_SPOP_SBC_1
0.3333
p.K1136N
SNU-175
large_intestine
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.3333
p.V1128L
SIDM00337
Melanoma
GDSC
VSTTS
DEG_SPOP_SBC_1
0.6765
p.K1136R
SIDM00537
Colorectal Carcinoma
GDSC
VSTTS
DEG_SPOP_SBC_1
0.3333
p.K1136R
ACH-001345
Colon/Colorectal Cancer
CCLE
VSTTS
DEG_SPOP_SBC_1
0.3333
p.K1136R
GP5d
large_intestine
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.3333
p.S1136N
IMR-5
autonomic_ganglia
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.3333
p.M1119V
EW-18
bone
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.0833
p.V1128I
HOP-92
lung
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.7076
p.A1128T
HOP-92
lung
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.7139
p.R1133H
CML-T1
haematopoietic_and_lymphoid_tissue
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.75
p.L1134M
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with CEP170 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95644
Nuclear factor of activated T-cells, cytoplasmic 1
DEG_SPOP_SBC_1
502:506
VSTTS
SPOP
0.7497
More...
O95678
Keratin, type II cytoskeletal 75
DEG_SPOP_SBC_1
539:543
VSTTS
SPOP
0.9912
More...
P13647
Keratin, type II cytoskeletal 5
DEG_SPOP_SBC_1
578:582
VSTTS
SPOP
0.9568
More...
P47736
Rap1 GTPase-activating protein 1
DEG_SPOP_SBC_1
617:621
VSTTS
SPOP
0.9852
More...
Q5SW79
Centrosomal protein of 170 kDa
DEG_SPOP_SBC_1
1128:1132
VSTTS
SPOP
0.9947
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
243:247
VSTTS
SPOP
0.9283
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12353:12357
VSTTS
SPOP
0.6523
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
13758:13762
VSTTS
SPOP
0.7914
More...
Q99963
Endophilin-A3
DEG_SPOP_SBC_1
270:274
VSTTS
SPOP
0.9977
More...
Q9HCM3
UPF0606 protein KIAA1549
DEG_SPOP_SBC_1
883:887
VSTTS
SPOP
0.9959
More...
E2RYF6
Mucin-22
DEG_SPOP_SBC_1
1378:1382
VSTTS
SPOP
0.9643
More...
O75157
TSC22 domain family protein 2
DEG_SPOP_SBC_1
521:525
VSTTS
SPOP
0.9064
More...