DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VTSTS
Uniprot ID:
Q8TCU4
Source protein:
Alstrom syndrome protein 1
Source gene:
ALMS1
Class:
DEG_SPOP_SBC_1
Location:
1139:1143
E3 ligase:
SPOP
DEGRON score:
0.9584
ASA_SCORE:
83.12
COIL:
0.9034
CONS_SCORE:
0.6096
DSS_SCORE:
0.6785
HELIX:
0.0258
FCONS_SCORE:
1.2035
RIG_SCORE:
0.6753
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K1149N
TCGA-17-Z030
LUAD
TCGA
VTSTS
DEG_SPOP_SBC_1
0.1667
p.T1137I
TCGA-AP-A059
UCEC
TCGA
VTSTS
DEG_SPOP_SBC_1
0.2778
p.G1134S
TCGA-BR-4368
STAD
TCGA
VTSTS
DEG_SPOP_SBC_1
0.1944
p.G1134S
DO38715
STAD
ICGC
VTSTS
DEG_SPOP_SBC_1
0.1944
p.T1141I
TCGA-DU-6392
LGG
TCGA
VTSTS
DEG_SPOP_SBC_1
0.7078
p.T1141I
DO22237
LGG
ICGC
VTSTS
DEG_SPOP_SBC_1
0.7078
p.T1141I
ACH-000548
Head and Neck Cancer
CCLE
VTSTS
DEG_SPOP_SBC_1
0.7078
p.P1150S
TCGA-QF-A5YS
UCEC
TCGA
VTSTS
DEG_SPOP_SBC_1
0.25
p.P1150S
DO52426
UCEC
ICGC
VTSTS
DEG_SPOP_SBC_1
0.25
p.D1130N
DO222768
BTCA
ICGC
VTSTS
DEG_SPOP_SBC_1
0.0833
p.Q1131K
DO231954
LICA
ICGC
VTSTS
DEG_SPOP_SBC_1
0.1111
p.G1134V
DO228971
LICA
ICGC
VTSTS
DEG_SPOP_SBC_1
0.1944
p.R1143K
DO36556
READ
ICGC
VTSTS
DEG_SPOP_SBC_1
0.7237
p.T1142I
SIDM00986
Head and Neck Carcinoma
GDSC
VTSTS
DEG_SPOP_SBC_1
0.7078
p.T1142I
BHY
upper_aerodigestive_tract
COSMIC
VTSTS
DEG_SPOP_SBC_1
0.7078
p.T1148A
PWR-1E
prostate
COSMIC
VTSTS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with ALMS1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A1A519
Protein FAM170A
DEG_SPOP_SBC_1
51:55
VTSTS
SPOP
0.8827
More...
O75475
PC4 and SFRS1-interacting protein
DEG_SPOP_SBC_1
269:273
VTSTS
SPOP
0.9904
More...
P35638
DNA damage-inducible transcript 3 protein
DEG_SPOP_SBC_1
73:77
VTSTS
SPOP
0.8287
More...
Q01546
Keratin, type II cytoskeletal 2 oral
DEG_SPOP_SBC_1
512:516
VTSTS
SPOP
0.6377
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
804:808
VTSTS
SPOP
0.8927
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1557:1561
VTSTS
SPOP
0.8949
More...
Q14966
Zinc finger protein 638
DEG_SPOP_SBC_1
787:791
VTSTS
SPOP
0.9967
More...
Q6W4X9
Mucin-6
DEG_SPOP_SBC_1
1761:1765
VTSTS
SPOP
0.5627
More...
Q7Z7A1
Centriolin
DEG_SPOP_SBC_1
2288:2292
VTSTS
SPOP
0.8742
More...
Q8IZF6
Adhesion G-protein coupled receptor G4
DEG_SPOP_SBC_1
1248:1252
VTSTS
SPOP
0.959
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
1139:1143
VTSTS
SPOP
0.9584
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
1376:1380
VTSTS
SPOP
0.995
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
1801:1805
VTSTS
SPOP
0.9919
More...
Q96T58
Msx2-interacting protein
DEG_SPOP_SBC_1
2549:2553
VTSTS
SPOP
0.9158
More...
Q9H2X6
Homeodomain-interacting protein kinase 2
DEG_SPOP_SBC_1
1006:1010
VTSTS
SPOP
0.8996
More...
Q8NET4
Retrotransposon Gag-like protein 9
DEG_SPOP_SBC_1
870:874
VTSTS
SPOP
0.9347
More...