DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
AVTTT
Uniprot ID:
P52756
Source protein:
RNA-binding protein 5
Source gene:
RBM5
Class:
DEG_SPOP_SBC_1
Location:
400:404
E3 ligase:
SPOP
DEGRON score:
0.6447
ASA_SCORE:
66.12
COIL:
0.711
CONS_SCORE:
0.1684
DSS_SCORE:
0.4683
HELIX:
0.1788
FCONS_SCORE:
0.9295
RIG_SCORE:
0.7057
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A406V
TCGA-2W-A8YY
CESC
TCGA
AVTTT
DEG_SPOP_SBC_1
0.2778
p.A406V
DO223732
CESC
ICGC
AVTTT
DEG_SPOP_SBC_1
0.2778
p.S394L
TCGA-CR-6488
HNSC
TCGA
AVTTT
DEG_SPOP_SBC_1
0.1667
p.S394L
DO14368
HNSC
ICGC
AVTTT
DEG_SPOP_SBC_1
0.1667
p.A400S
DO229029
LICA
ICGC
AVTTT
DEG_SPOP_SBC_1
0.7588
p.S395F
DO26434
LUSC
ICGC
AVTTT
DEG_SPOP_SBC_1
0.1944
Drug responses associated with RBM5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AVTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15054
Lysine-specific demethylase 6B
DEG_SPOP_SBC_1
750:754
AVTTT
SPOP
0.963
More...
O95104
SR-related and CTD-associated factor 4
DEG_SPOP_SBC_1
284:288
AVTTT
SPOP
0.5941
More...
P52756
RNA-binding protein 5
DEG_SPOP_SBC_1
400:404
AVTTT
SPOP
0.6447
More...
Q6Q4G3
Aminopeptidase Q
DEG_SPOP_SBC_1
79:83
AVTTT
SPOP
0.9845
More...
Q86SE5
RNA-binding Raly-like protein
DEG_SPOP_SBC_1
162:166
AVTTT
SPOP
0.9953
More...
Q8IWI9
MAX gene-associated protein
DEG_SPOP_SBC_1
1596:1600
AVTTT
SPOP
0.5077
More...
Q9H3R2
Mucin-13
DEG_SPOP_SBC_1
27:31
AVTTT
SPOP
0.8418
More...
Q9NSU2
Three-prime repair exonuclease 1
DEG_SPOP_SBC_1
247:251
AVTTT
SPOP
0.9952
More...
Q9UKJ1
Paired immunoglobulin-like type 2 receptor alpha
DEG_SPOP_SBC_1
152:156
AVTTT
SPOP
0.5634
More...
Q9Y2H9
Microtubule-associated serine/threonine-protein kinase 1
DEG_SPOP_SBC_1
1048:1052
AVTTT
SPOP
0.8655
More...
Q9UKJ0
Paired immunoglobulin-like type 2 receptor beta
DEG_SPOP_SBC_1
152:156
AVTTT
SPOP
0.7899
More...
A2A368
Melanoma-associated antigen B16
DEG_SPOP_SBC_1
74:78
AVTTT
SPOP
0.5345
More...