DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
AVTTT
Uniprot ID:
Q6Q4G3
Source protein:
Aminopeptidase Q
Source gene:
LVRN
Class:
DEG_SPOP_SBC_1
Location:
79:83
E3 ligase:
SPOP
DEGRON score:
0.9845
ASA_SCORE:
80.54
COIL:
0.8656
CONS_SCORE:
0.3974
DSS_SCORE:
0.6339
HELIX:
0.0244
FCONS_SCORE:
1.0115
RIG_SCORE:
0.6862
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R76L
SIDM00770
Small Cell Lung Carcinoma
GDSC
AVTTT
DEG_SPOP_SBC_1
0.25
p.R76L
NCI-H1836
lung
COSMIC
AVTTT
DEG_SPOP_SBC_1
0.25
p.T83A
SIDM00364
B-Lymphoblastic Leukemia
GDSC
AVTTT
DEG_SPOP_SBC_1
0.7139
p.T83A
P30-OHK
haematopoietic_and_lymphoid_tissue
COSMIC
AVTTT
DEG_SPOP_SBC_1
0.7139
p.T83P
RCC-ER
kidney
COSMIC
AVTTT
DEG_SPOP_SBC_1
0.7031
Drug responses associated with LVRN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AVTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15054
Lysine-specific demethylase 6B
DEG_SPOP_SBC_1
750:754
AVTTT
SPOP
0.963
More...
O95104
SR-related and CTD-associated factor 4
DEG_SPOP_SBC_1
284:288
AVTTT
SPOP
0.5941
More...
P52756
RNA-binding protein 5
DEG_SPOP_SBC_1
400:404
AVTTT
SPOP
0.6447
More...
Q6Q4G3
Aminopeptidase Q
DEG_SPOP_SBC_1
79:83
AVTTT
SPOP
0.9845
More...
Q86SE5
RNA-binding Raly-like protein
DEG_SPOP_SBC_1
162:166
AVTTT
SPOP
0.9953
More...
Q8IWI9
MAX gene-associated protein
DEG_SPOP_SBC_1
1596:1600
AVTTT
SPOP
0.5077
More...
Q9H3R2
Mucin-13
DEG_SPOP_SBC_1
27:31
AVTTT
SPOP
0.8418
More...
Q9NSU2
Three-prime repair exonuclease 1
DEG_SPOP_SBC_1
247:251
AVTTT
SPOP
0.9952
More...
Q9UKJ1
Paired immunoglobulin-like type 2 receptor alpha
DEG_SPOP_SBC_1
152:156
AVTTT
SPOP
0.5634
More...
Q9Y2H9
Microtubule-associated serine/threonine-protein kinase 1
DEG_SPOP_SBC_1
1048:1052
AVTTT
SPOP
0.8655
More...
Q9UKJ0
Paired immunoglobulin-like type 2 receptor beta
DEG_SPOP_SBC_1
152:156
AVTTT
SPOP
0.7899
More...
A2A368
Melanoma-associated antigen B16
DEG_SPOP_SBC_1
74:78
AVTTT
SPOP
0.5345
More...