DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PKTSS
Uniprot ID:
Q6ZWJ1
Source protein:
Syntaxin-binding protein 4
Source gene:
STXBP4
Class:
DEG_SPOP_SBC_1
Location:
149:153
E3 ligase:
SPOP
DEGRON score:
0.8731
ASA_SCORE:
99.04
COIL:
0.9702
CONS_SCORE:
0.4996
DSS_SCORE:
0.5402
HELIX:
0.0116
FCONS_SCORE:
0.9707
RIG_SCORE:
0.6945
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P149Q
TCGA-EE-A2GN
SKCM
TCGA
PKTSS
DEG_SPOP_SBC_1
0.7035
p.P149Q
DO37896
SKCM
ICGC
PKTSS
DEG_SPOP_SBC_1
0.7035
p.S141F
DO222749
MELA
ICGC
PKTSS
DEG_SPOP_SBC_1
0.1111
p.P144L
SIDM00915
Small Cell Lung Carcinoma
GDSC
PKTSS
DEG_SPOP_SBC_1
0.1944
p.P144L
ACH-002173
Lung Cancer
CCLE
PKTSS
DEG_SPOP_SBC_1
0.1944
p.P144L
NCI-H378
lung
COSMIC
PKTSS
DEG_SPOP_SBC_1
0.1944
p.P143S
SIDM00210
Ovarian Carcinoma
GDSC
PKTSS
DEG_SPOP_SBC_1
0.1667
p.L145M
AMO-1
haematopoietic_and_lymphoid_tissue
COSMIC
PKTSS
DEG_SPOP_SBC_1
0.2222
p.R139C
GP5d
large_intestine
COSMIC
PKTSS
DEG_SPOP_SBC_1
0.0556
Drug responses associated with STXBP4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PKTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43303
Centriolar coiled-coil protein of 110 kDa
DEG_SPOP_SBC_1
188:192
PKTSS
SPOP
0.6385
More...
O43314
Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2
DEG_SPOP_SBC_1
489:493
PKTSS
SPOP
0.8197
More...
Q14966
Zinc finger protein 638
DEG_SPOP_SBC_1
610:614
PKTSS
SPOP
0.8762
More...
Q6ZT12
E3 ubiquitin-protein ligase UBR3
DEG_SPOP_SBC_1
1063:1067
PKTSS
SPOP
0.955
More...
Q6ZWJ1
Syntaxin-binding protein 4
DEG_SPOP_SBC_1
149:153
PKTSS
SPOP
0.8731
More...
Q8NFC6
Biorientation of chromosomes in cell division protein 1-like 1
DEG_SPOP_SBC_1
2822:2826
PKTSS
SPOP
0.9052
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
3053:3057
PKTSS
SPOP
0.8531
More...
Q96GS4
BLOC-1-related complex subunit 6
DEG_SPOP_SBC_1
62:66
PKTSS
SPOP
0.9347
More...
Q9BX26
Synaptonemal complex protein 2
DEG_SPOP_SBC_1
1141:1145
PKTSS
SPOP
0.958
More...
Q9NSI6
Bromodomain and WD repeat-containing protein 1
DEG_SPOP_SBC_1
1292:1296
PKTSS
SPOP
0.6269
More...
Q9Y6B7
AP-4 complex subunit beta-1
DEG_SPOP_SBC_1
589:593
PKTSS
SPOP
0.9969
More...