DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PKTSS
Uniprot ID:
Q8TCU4
Source protein:
Alstrom syndrome protein 1
Source gene:
ALMS1
Class:
DEG_SPOP_SBC_1
Location:
3053:3057
E3 ligase:
SPOP
DEGRON score:
0.8531
ASA_SCORE:
86.5
COIL:
0.893
CONS_SCORE:
0.4116
DSS_SCORE:
0.2126
HELIX:
0.045
FCONS_SCORE:
0.9053
RIG_SCORE:
0.7215
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R3066I
TCGA-EO-A3B0
UCEC
TCGA
PKTSS
DEG_SPOP_SBC_1
0.0833
p.F3067L
TCGA-FI-A2D5
UCEC
TCGA
PKTSS
DEG_SPOP_SBC_1
0.0556
p.P3052S
TCGA-UY-A9PD
BLCA
TCGA
PKTSS
DEG_SPOP_SBC_1
0.3056
p.S3049W
DO219049
BLCA
ICGC
PKTSS
DEG_SPOP_SBC_1
0.2222
p.D3067Y
DO229025
LICA
ICGC
PKTSS
DEG_SPOP_SBC_1
0.0556
p.A3065V
DO229050
LICA
ICGC
PKTSS
DEG_SPOP_SBC_1
0.1111
p.S3057P
SIDM01336
Glioblastoma
GDSC
PKTSS
DEG_SPOP_SBC_1
0.6752
p.S3056P
ACH-000368
Brain Cancer
CCLE
PKTSS
DEG_SPOP_SBC_1
0.6752
Drug responses associated with ALMS1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PKTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43303
Centriolar coiled-coil protein of 110 kDa
DEG_SPOP_SBC_1
188:192
PKTSS
SPOP
0.6385
More...
O43314
Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2
DEG_SPOP_SBC_1
489:493
PKTSS
SPOP
0.8197
More...
Q14966
Zinc finger protein 638
DEG_SPOP_SBC_1
610:614
PKTSS
SPOP
0.8762
More...
Q6ZT12
E3 ubiquitin-protein ligase UBR3
DEG_SPOP_SBC_1
1063:1067
PKTSS
SPOP
0.955
More...
Q6ZWJ1
Syntaxin-binding protein 4
DEG_SPOP_SBC_1
149:153
PKTSS
SPOP
0.8731
More...
Q8NFC6
Biorientation of chromosomes in cell division protein 1-like 1
DEG_SPOP_SBC_1
2822:2826
PKTSS
SPOP
0.9052
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
3053:3057
PKTSS
SPOP
0.8531
More...
Q96GS4
BLOC-1-related complex subunit 6
DEG_SPOP_SBC_1
62:66
PKTSS
SPOP
0.9347
More...
Q9BX26
Synaptonemal complex protein 2
DEG_SPOP_SBC_1
1141:1145
PKTSS
SPOP
0.958
More...
Q9NSI6
Bromodomain and WD repeat-containing protein 1
DEG_SPOP_SBC_1
1292:1296
PKTSS
SPOP
0.6269
More...
Q9Y6B7
AP-4 complex subunit beta-1
DEG_SPOP_SBC_1
589:593
PKTSS
SPOP
0.9969
More...