DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PKTSS
Uniprot ID:
Q9BX26
Source protein:
Synaptonemal complex protein 2
Source gene:
SYCP2
Class:
DEG_SPOP_SBC_1
Location:
1141:1145
E3 ligase:
SPOP
DEGRON score:
0.958
ASA_SCORE:
95.86
COIL:
0.9298
CONS_SCORE:
0.3387
DSS_SCORE:
0.4202
HELIX:
0.0358
FCONS_SCORE:
0.9426
RIG_SCORE:
0.7096
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T1134I
TCGA-5X-AA5U
OV
TCGA
PKTSS
DEG_SPOP_SBC_1
0.1389
p.T1134I
DO224035
OV
ICGC
PKTSS
DEG_SPOP_SBC_1
0.1389
p.S1138L
TCGA-DD-A73A
LIHC
TCGA
PKTSS
DEG_SPOP_SBC_1
0.6944
p.S1138L
TCGA-WE-A8ZX
SKCM
TCGA
PKTSS
DEG_SPOP_SBC_1
0.6944
p.S1138L
DO48478
LIHC
ICGC
PKTSS
DEG_SPOP_SBC_1
0.6944
p.S1138L
DO51291
SKCM
ICGC
PKTSS
DEG_SPOP_SBC_1
0.6944
p.S1136Y
TCGA-E6-A1LX
UCEC
TCGA
PKTSS
DEG_SPOP_SBC_1
0.1944
p.S1136Y
DO41020
UCEC
ICGC
PKTSS
DEG_SPOP_SBC_1
0.1944
p.N1152K
DO228976
LICA
ICGC
PKTSS
DEG_SPOP_SBC_1
0.1389
p.S1148Y
DO23174
LINC
ICGC
PKTSS
DEG_SPOP_SBC_1
0.25
Drug responses associated with SYCP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PKTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43303
Centriolar coiled-coil protein of 110 kDa
DEG_SPOP_SBC_1
188:192
PKTSS
SPOP
0.6385
More...
O43314
Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2
DEG_SPOP_SBC_1
489:493
PKTSS
SPOP
0.8197
More...
Q14966
Zinc finger protein 638
DEG_SPOP_SBC_1
610:614
PKTSS
SPOP
0.8762
More...
Q6ZT12
E3 ubiquitin-protein ligase UBR3
DEG_SPOP_SBC_1
1063:1067
PKTSS
SPOP
0.955
More...
Q6ZWJ1
Syntaxin-binding protein 4
DEG_SPOP_SBC_1
149:153
PKTSS
SPOP
0.8731
More...
Q8NFC6
Biorientation of chromosomes in cell division protein 1-like 1
DEG_SPOP_SBC_1
2822:2826
PKTSS
SPOP
0.9052
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
3053:3057
PKTSS
SPOP
0.8531
More...
Q96GS4
BLOC-1-related complex subunit 6
DEG_SPOP_SBC_1
62:66
PKTSS
SPOP
0.9347
More...
Q9BX26
Synaptonemal complex protein 2
DEG_SPOP_SBC_1
1141:1145
PKTSS
SPOP
0.958
More...
Q9NSI6
Bromodomain and WD repeat-containing protein 1
DEG_SPOP_SBC_1
1292:1296
PKTSS
SPOP
0.6269
More...
Q9Y6B7
AP-4 complex subunit beta-1
DEG_SPOP_SBC_1
589:593
PKTSS
SPOP
0.9969
More...