DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VESSS
Uniprot ID:
Q8N5B7
Source protein:
Ceramide synthase 5
Source gene:
CERS5
Class:
DEG_SPOP_SBC_1
Location:
352:356
E3 ligase:
SPOP
DEGRON score:
0.6322
ASA_SCORE:
91.54
COIL:
0.9154
CONS_SCORE:
0.3821
DSS_SCORE:
0.5357
HELIX:
0.0534
FCONS_SCORE:
1.0765
RIG_SCORE:
0.6411
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D348Y
TCGA-78-8660
LUAD
TCGA
VESSS
DEG_SPOP_SBC_1
0.2222
p.R349H
TCGA-BR-8591
STAD
TCGA
VESSS
DEG_SPOP_SBC_1
0.25
p.R349C
TCGA-CA-6717
COAD
TCGA
VESSS
DEG_SPOP_SBC_1
0.25
p.R349C
TCGA-DD-AAD1
LIHC
TCGA
VESSS
DEG_SPOP_SBC_1
0.25
p.D351N
SIDM01233
Colorectal Carcinoma
GDSC
VESSS
DEG_SPOP_SBC_1
0.3056
p.D351N
ACH-000003
CCLE
VESSS
DEG_SPOP_SBC_1
0.3056
p.D351N
ACH-000009
Colon/Colorectal Cancer
CCLE
VESSS
DEG_SPOP_SBC_1
0.3056
p.D351N
C2BBe1
large_intestine
COSMIC
VESSS
DEG_SPOP_SBC_1
0.3056
p.S345L
SIDM00217
Colorectal Carcinoma
GDSC
VESSS
DEG_SPOP_SBC_1
0.1389
p.S345L
ACH-000999
Colon/Colorectal Cancer
CCLE
VESSS
DEG_SPOP_SBC_1
0.1389
p.S345L
SNU-1040
large_intestine
COSMIC
VESSS
DEG_SPOP_SBC_1
0.1389
Drug responses associated with CERS5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VESSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P38398
Breast cancer type 1 susceptibility protein
DEG_SPOP_SBC_1
764:768
VESSS
SPOP
0.9922
More...
P46100
Transcriptional regulator ATRX
DEG_SPOP_SBC_1
556:560
VESSS
SPOP
0.9969
More...
Q16236
Nuclear factor erythroid 2-related factor 2
DEG_SPOP_SBC_1
361:365
VESSS
SPOP
0.9641
More...
Q58EX7
Puratrophin-1
DEG_SPOP_SBC_1
87:91
VESSS
SPOP
0.97
More...
Q6ZW76
Ankyrin repeat and SAM domain-containing protein 3
DEG_SPOP_SBC_1
327:331
VESSS
SPOP
0.9989
More...
Q86XP1
Diacylglycerol kinase eta
DEG_SPOP_SBC_1
584:588
VESSS
SPOP
0.7501
More...
Q8N108
Mesoderm induction early response protein 1
DEG_SPOP_SBC_1
6:10
VESSS
SPOP
0.7443
More...
Q8N5B7
Ceramide synthase 5
DEG_SPOP_SBC_1
352:356
VESSS
SPOP
0.6322
More...
Q8NEM8
Cytosolic carboxypeptidase 3
DEG_SPOP_SBC_1
611:615
VESSS
SPOP
0.7484
More...
Q8NFG4
Folliculin
DEG_SPOP_SBC_1
69:73
VESSS
SPOP
0.5048
More...
Q9H4Z2
Zinc finger protein 335
DEG_SPOP_SBC_1
6:10
VESSS
SPOP
0.5869
More...
Q9P272
Probable tRNA methyltransferase 9B
DEG_SPOP_SBC_1
313:317
VESSS
SPOP
0.7748
More...
Q9UHY1
Nuclear receptor-binding protein
DEG_SPOP_SBC_1
18:22
VESSS
SPOP
0.9939
More...
Q8NCQ7
Protein PROCA1
DEG_SPOP_SBC_1
323:327
VESSS
SPOP
0.5806
More...
Q9H158
Protocadherin alpha-C1
DEG_SPOP_SBC_1
500:504
VESSS
SPOP
0.5524
More...
Q5TG30
Rho GTPase-activating protein 40
DEG_SPOP_SBC_1
24:28
VESSS
SPOP
0.9601
More...
Q8NDA8
Maestro heat-like repeat-containing protein family member 1
DEG_SPOP_SBC_1
321:325
VESSS
SPOP
0.5715
More...
A8MU93
Uncharacterized protein C17orf100
DEG_SPOP_SBC_1
71:75
VESSS
SPOP
0.9225
More...