DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VESTS
Uniprot ID:
Q8IXF0
Source protein:
Neuronal PAS domain-containing protein 3
Source gene:
NPAS3
Class:
DEG_SPOP_SBC_1
Location:
245:249
E3 ligase:
SPOP
DEGRON score:
0.9923
ASA_SCORE:
79.54
COIL:
0.8682
CONS_SCORE:
0.339
DSS_SCORE:
0.7188
HELIX:
0.074
FCONS_SCORE:
1.1234
RIG_SCORE:
0.6187
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D256H
TCGA-55-7995
LUAD
TCGA
VESTS
DEG_SPOP_SBC_1
0.1389
p.Q238K
TCGA-56-8083
LUSC
TCGA
VESTS
DEG_SPOP_SBC_1
0.1389
p.S249C
TCGA-66-2768
LUSC
TCGA
VESTS
DEG_SPOP_SBC_1
0.7541
p.S249A
DO7801
COAD
ICGC
VESTS
DEG_SPOP_SBC_1
0.7588
p.R242H
DO227976
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.25
p.R242C
DO233642
GACA
ICGC
VESTS
DEG_SPOP_SBC_1
0.25
p.Q254H
DO229045
LICA
ICGC
VESTS
DEG_SPOP_SBC_1
0.1944
p.T240N
DO231587
LINC
ICGC
VESTS
DEG_SPOP_SBC_1
0.1944
p.I246S
DO26814
LUSC
ICGC
VESTS
DEG_SPOP_SBC_1
0.7341
p.R259W
DO220122
SARC
ICGC
VESTS
DEG_SPOP_SBC_1
0.0556
p.R259W
DO43755
UCEC
ICGC
VESTS
DEG_SPOP_SBC_1
0.0556
p.T238N
DO43306
UCEC
ICGC
VESTS
DEG_SPOP_SBC_1
0.1389
p.S247P
SIDM00434
Plasma Cell Myeloma
GDSC
VESTS
DEG_SPOP_SBC_1
0.6752
p.S247P
MOLP-8
haematopoietic_and_lymphoid_tissue
COSMIC
VESTS
DEG_SPOP_SBC_1
0.6752
p.S252P
ACH-000745
Myeloma
CCLE
VESTS
DEG_SPOP_SBC_1
0.25
p.S252P
ACH-001673
Bile Duct Cancer
CCLE
VESTS
DEG_SPOP_SBC_1
0.25
p.S252P
MOLP-8
haematopoietic_and_lymphoid_tissue
COSMIC
VESTS
DEG_SPOP_SBC_1
0.25
Drug responses associated with NPAS3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VESTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13611
Versican core protein
DEG_SPOP_SBC_1
2290:2294
VESTS
SPOP
0.6598
More...
P18583
Protein SON
DEG_SPOP_SBC_1
279:283
VESTS
SPOP
0.9537
More...
P41229
Lysine-specific demethylase 5C
DEG_SPOP_SBC_1
283:287
VESTS
SPOP
0.9432
More...
Q04656
Copper-transporting ATPase 1
DEG_SPOP_SBC_1
351:355
VESTS
SPOP
0.6792
More...
Q14693
Phosphatidate phosphatase LPIN1
DEG_SPOP_SBC_1
451:455
VESTS
SPOP
0.9287
More...
Q6UX34
Protein SNORC
DEG_SPOP_SBC_1
49:53
VESTS
SPOP
0.8482
More...
Q8IXF0
Neuronal PAS domain-containing protein 3
DEG_SPOP_SBC_1
245:249
VESTS
SPOP
0.9923
More...
Q8TEP8
Centrosomal protein of 192 kDa
DEG_SPOP_SBC_1
668:672
VESTS
SPOP
0.5574
More...
Q96H15
T-cell immunoglobulin and mucin domain-containing protein 4
DEG_SPOP_SBC_1
240:244
VESTS
SPOP
0.993
More...
Q9BY11
Protein kinase C and casein kinase substrate in neurons protein 1
DEG_SPOP_SBC_1
335:339
VESTS
SPOP
0.6175
More...
Q9NQW6
Anillin
DEG_SPOP_SBC_1
88:92
VESTS
SPOP
0.9904
More...
Q9Y4G2
Pleckstrin homology domain-containing family M member 1
DEG_SPOP_SBC_1
390:394
VESTS
SPOP
0.9903
More...