DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VESTS
Uniprot ID:
Q9BY11
Source protein:
Protein kinase C and casein kinase substrate in neurons protein 1
Source gene:
PACSIN1
Class:
DEG_SPOP_SBC_1
Location:
335:339
E3 ligase:
SPOP
DEGRON score:
0.6175
ASA_SCORE:
74.34
COIL:
0.6624
CONS_SCORE:
0.3755
DSS_SCORE:
0.5941
HELIX:
0.1374
FCONS_SCORE:
0.9637
RIG_SCORE:
0.6935
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G345S
TCGA-BR-A4IY
STAD
TCGA
VESTS
DEG_SPOP_SBC_1
0.1667
p.G345S
DO228609
LICA
ICGC
VESTS
DEG_SPOP_SBC_1
0.1667
p.G345S
DO38396
STAD
ICGC
VESTS
DEG_SPOP_SBC_1
0.1667
p.G345S
SIDM00596
Endometrial Carcinoma
GDSC
VESTS
DEG_SPOP_SBC_1
0.1667
p.G345S
ACH-001517
Endometrial/Uterine Cancer
CCLE
VESTS
DEG_SPOP_SBC_1
0.1667
p.G345S
HEC-1
endometrium
COSMIC
VESTS
DEG_SPOP_SBC_1
0.1667
p.D343N
TCGA-GN-A8LK
SKCM
TCGA
VESTS
DEG_SPOP_SBC_1
0.2222
p.D343N
DO51259
SKCM
ICGC
VESTS
DEG_SPOP_SBC_1
0.2222
p.A334V
DO228483
BRCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.3056
p.A334V
DO52365
LUSC
ICGC
VESTS
DEG_SPOP_SBC_1
0.3056
p.A334E
DO228264
LICA
ICGC
VESTS
DEG_SPOP_SBC_1
0.3056
p.T338A
DO228667
LICA
ICGC
VESTS
DEG_SPOP_SBC_1
0.7139
p.G333A
SIDM00926
Non-Small Cell Lung Carcinoma
GDSC
VESTS
DEG_SPOP_SBC_1
0.2778
p.G333A
ACH-000924
Lung Cancer
CCLE
VESTS
DEG_SPOP_SBC_1
0.2778
p.G333A
NCI-H2172
lung
COSMIC
VESTS
DEG_SPOP_SBC_1
0.2778
p.A334T
SIDM00120
Prostate Carcinoma
GDSC
VESTS
DEG_SPOP_SBC_1
0.3056
p.A334T
ACH-000979
Prostate Cancer
CCLE
VESTS
DEG_SPOP_SBC_1
0.3056
p.A334T
DU-145
prostate
COSMIC
VESTS
DEG_SPOP_SBC_1
0.3056
p.V335L
SIDM01124
Non-Small Cell Lung Carcinoma
GDSC
VESTS
DEG_SPOP_SBC_1
0.6765
p.V335L
ACH-000945
Lung Cancer
CCLE
VESTS
DEG_SPOP_SBC_1
0.6765
p.V335L
NCI-H650
lung
COSMIC
VESTS
DEG_SPOP_SBC_1
0.6765
p.S339F
ACH-000309
Lung Cancer
CCLE
VESTS
DEG_SPOP_SBC_1
0.7982
p.E331K
SW756
cervix
COSMIC
VESTS
DEG_SPOP_SBC_1
0.2222
p.N337K
RCC-ER
kidney
COSMIC
VESTS
DEG_SPOP_SBC_1
0.6918
p.G345R
SF268
central_nervous_system
COSMIC
VESTS
DEG_SPOP_SBC_1
0.1667
Drug responses associated with PACSIN1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VESTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13611
Versican core protein
DEG_SPOP_SBC_1
2290:2294
VESTS
SPOP
0.6598
More...
P18583
Protein SON
DEG_SPOP_SBC_1
279:283
VESTS
SPOP
0.9537
More...
P41229
Lysine-specific demethylase 5C
DEG_SPOP_SBC_1
283:287
VESTS
SPOP
0.9432
More...
Q04656
Copper-transporting ATPase 1
DEG_SPOP_SBC_1
351:355
VESTS
SPOP
0.6792
More...
Q14693
Phosphatidate phosphatase LPIN1
DEG_SPOP_SBC_1
451:455
VESTS
SPOP
0.9287
More...
Q6UX34
Protein SNORC
DEG_SPOP_SBC_1
49:53
VESTS
SPOP
0.8482
More...
Q8IXF0
Neuronal PAS domain-containing protein 3
DEG_SPOP_SBC_1
245:249
VESTS
SPOP
0.9923
More...
Q8TEP8
Centrosomal protein of 192 kDa
DEG_SPOP_SBC_1
668:672
VESTS
SPOP
0.5574
More...
Q96H15
T-cell immunoglobulin and mucin domain-containing protein 4
DEG_SPOP_SBC_1
240:244
VESTS
SPOP
0.993
More...
Q9BY11
Protein kinase C and casein kinase substrate in neurons protein 1
DEG_SPOP_SBC_1
335:339
VESTS
SPOP
0.6175
More...
Q9NQW6
Anillin
DEG_SPOP_SBC_1
88:92
VESTS
SPOP
0.9904
More...
Q9Y4G2
Pleckstrin homology domain-containing family M member 1
DEG_SPOP_SBC_1
390:394
VESTS
SPOP
0.9903
More...