DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VESTS
Uniprot ID:
Q96H15
Source protein:
T-cell immunoglobulin and mucin domain-containing protein 4
Source gene:
TIMD4
Class:
DEG_SPOP_SBC_1
Location:
240:244
E3 ligase:
SPOP
DEGRON score:
0.993
ASA_SCORE:
76.06
COIL:
0.6992
CONS_SCORE:
0.345
DSS_SCORE:
0.399
HELIX:
0.0234
FCONS_SCORE:
0.8804
RIG_SCORE:
0.7218
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L249R
TCGA-44-2659
LUAD
TCGA
VESTS
DEG_SPOP_SBC_1
0.1944
p.L249R
DO23744
LUAD
ICGC
VESTS
DEG_SPOP_SBC_1
0.1944
p.S239I
TCGA-92-8065
LUSC
TCGA
VESTS
DEG_SPOP_SBC_1
0.3056
p.S239I
DO27074
LUSC
ICGC
VESTS
DEG_SPOP_SBC_1
0.3056
p.S244Y
TCGA-AJ-A3EK
UCEC
TCGA
VESTS
DEG_SPOP_SBC_1
0.712
p.S244Y
DO41584
UCEC
ICGC
VESTS
DEG_SPOP_SBC_1
0.712
p.T230A
TCGA-AX-A06F
UCEC
TCGA
VESTS
DEG_SPOP_SBC_1
0.0556
p.T230A
DO41752
UCEC
ICGC
VESTS
DEG_SPOP_SBC_1
0.0556
p.S252F
TCGA-B5-A3FC
UCEC
TCGA
VESTS
DEG_SPOP_SBC_1
0.1111
p.S252F
DO41871
UCEC
ICGC
VESTS
DEG_SPOP_SBC_1
0.1111
p.A245T
TCGA-DM-A1D6
COAD
TCGA
VESTS
DEG_SPOP_SBC_1
0.3056
p.A245T
DO10686
COAD
ICGC
VESTS
DEG_SPOP_SBC_1
0.3056
p.L232F
TCGA-EE-A2MS
SKCM
TCGA
VESTS
DEG_SPOP_SBC_1
0.1111
p.L232F
DO37567
SKCM
ICGC
VESTS
DEG_SPOP_SBC_1
0.1111
p.D235N
TCGA-W3-A825
SKCM
TCGA
VESTS
DEG_SPOP_SBC_1
0.1944
p.D235N
DO51272
SKCM
ICGC
VESTS
DEG_SPOP_SBC_1
0.1944
p.V240A
DO229010
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.V240A
DO229013
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.V240A
DO229016
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.V240A
DO229003
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.V240A
DO229005
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.L250P
DO232832
NACA
ICGC
VESTS
DEG_SPOP_SBC_1
0.1667
p.S236F
SIDM00444
Esophageal Carcinoma
GDSC
VESTS
DEG_SPOP_SBC_1
0.2222
p.S236F
OACM5-1
oesophagus
COSMIC
VESTS
DEG_SPOP_SBC_1
0.2222
p.D246E
ACH-000700
Lung Cancer
CCLE
VESTS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with TIMD4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VESTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13611
Versican core protein
DEG_SPOP_SBC_1
2290:2294
VESTS
SPOP
0.6598
More...
P18583
Protein SON
DEG_SPOP_SBC_1
279:283
VESTS
SPOP
0.9537
More...
P41229
Lysine-specific demethylase 5C
DEG_SPOP_SBC_1
283:287
VESTS
SPOP
0.9432
More...
Q04656
Copper-transporting ATPase 1
DEG_SPOP_SBC_1
351:355
VESTS
SPOP
0.6792
More...
Q14693
Phosphatidate phosphatase LPIN1
DEG_SPOP_SBC_1
451:455
VESTS
SPOP
0.9287
More...
Q6UX34
Protein SNORC
DEG_SPOP_SBC_1
49:53
VESTS
SPOP
0.8482
More...
Q8IXF0
Neuronal PAS domain-containing protein 3
DEG_SPOP_SBC_1
245:249
VESTS
SPOP
0.9923
More...
Q8TEP8
Centrosomal protein of 192 kDa
DEG_SPOP_SBC_1
668:672
VESTS
SPOP
0.5574
More...
Q96H15
T-cell immunoglobulin and mucin domain-containing protein 4
DEG_SPOP_SBC_1
240:244
VESTS
SPOP
0.993
More...
Q9BY11
Protein kinase C and casein kinase substrate in neurons protein 1
DEG_SPOP_SBC_1
335:339
VESTS
SPOP
0.6175
More...
Q9NQW6
Anillin
DEG_SPOP_SBC_1
88:92
VESTS
SPOP
0.9904
More...
Q9Y4G2
Pleckstrin homology domain-containing family M member 1
DEG_SPOP_SBC_1
390:394
VESTS
SPOP
0.9903
More...