DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VESTS
Uniprot ID:
Q96H15
Source protein:
T-cell immunoglobulin and mucin domain-containing protein 4
Source gene:
TIMD4
Class:
DEG_SPOP_SBC_1
Location:
240:244
E3 ligase:
SPOP
DEGRON score:
0.993
ASA_SCORE:
76.06
COIL:
0.6992
CONS_SCORE:
0.345
DSS_SCORE:
0.399
HELIX:
0.0234
FCONS_SCORE:
0.8804
RIG_SCORE:
0.7218
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S244Y
TCGA-AJ-A3EK
UCEC
TCGA
VESTS
DEG_SPOP_SBC_1
0.712
p.S244Y
DO41584
UCEC
ICGC
VESTS
DEG_SPOP_SBC_1
0.712
p.V240A
DO229010
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.V240A
DO229013
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.V240A
DO229016
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.V240A
DO229003
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.V240A
DO229005
COCA
ICGC
VESTS
DEG_SPOP_SBC_1
0.5825
p.S239I
TCGA-92-8065
LUSC
TCGA
VESTS
DEG_SPOP_SBC_1
0.3056
p.S239I
DO27074
LUSC
ICGC
VESTS
DEG_SPOP_SBC_1
0.3056
p.A245T
TCGA-DM-A1D6
COAD
TCGA
VESTS
DEG_SPOP_SBC_1
0.3056
p.A245T
DO10686
COAD
ICGC
VESTS
DEG_SPOP_SBC_1
0.3056
p.D246E
ACH-000700
Lung Cancer
CCLE
VESTS
DEG_SPOP_SBC_1
0.2778
p.S236F
SIDM00444
Esophageal Carcinoma
GDSC
VESTS
DEG_SPOP_SBC_1
0.2222
p.S236F
OACM5-1
oesophagus
COSMIC
VESTS
DEG_SPOP_SBC_1
0.2222
p.L249R
TCGA-44-2659
LUAD
TCGA
VESTS
DEG_SPOP_SBC_1
0.1944
p.L249R
DO23744
LUAD
ICGC
VESTS
DEG_SPOP_SBC_1
0.1944
p.D235N
TCGA-W3-A825
SKCM
TCGA
VESTS
DEG_SPOP_SBC_1
0.1944
p.D235N
DO51272
SKCM
ICGC
VESTS
DEG_SPOP_SBC_1
0.1944
p.L250P
DO232832
NACA
ICGC
VESTS
DEG_SPOP_SBC_1
0.1667
p.S252F
TCGA-B5-A3FC
UCEC
TCGA
VESTS
DEG_SPOP_SBC_1
0.1111
p.S252F
DO41871
UCEC
ICGC
VESTS
DEG_SPOP_SBC_1
0.1111
p.L232F
TCGA-EE-A2MS
SKCM
TCGA
VESTS
DEG_SPOP_SBC_1
0.1111
p.L232F
DO37567
SKCM
ICGC
VESTS
DEG_SPOP_SBC_1
0.1111
p.T230A
TCGA-AX-A06F
UCEC
TCGA
VESTS
DEG_SPOP_SBC_1
0.0556
p.T230A
DO41752
UCEC
ICGC
VESTS
DEG_SPOP_SBC_1
0.0556
Showing 1 to 25 of 25 entries
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Drug responses associated with TIMD4 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VESTS
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NQW6
Anillin
DEG_SPOP_SBC_1
88:92
VESTS
SPOP
0.9904
More...
Q8TEP8
Centrosomal protein of 192 kDa
DEG_SPOP_SBC_1
668:672
VESTS
SPOP
0.5574
More...
Q04656
Copper-transporting ATPase 1
DEG_SPOP_SBC_1
351:355
VESTS
SPOP
0.6792
More...
P41229
Lysine-specific demethylase 5C
DEG_SPOP_SBC_1
283:287
VESTS
SPOP
0.9432
More...
Q8IXF0
Neuronal PAS domain-containing protein 3
DEG_SPOP_SBC_1
245:249
VESTS
SPOP
0.9923
More...
Q14693
Phosphatidate phosphatase LPIN1
DEG_SPOP_SBC_1
451:455
VESTS
SPOP
0.9287
More...
Q9Y4G2
Pleckstrin homology domain-containing family M member 1
DEG_SPOP_SBC_1
390:394
VESTS
SPOP
0.9903
More...
Q9BY11
Protein kinase C and casein kinase substrate in neurons protein 1
DEG_SPOP_SBC_1
335:339
VESTS
SPOP
0.6175
More...
Q6UX34
Protein SNORC
DEG_SPOP_SBC_1
49:53
VESTS
SPOP
0.8482
More...
P18583
Protein SON
DEG_SPOP_SBC_1
279:283
VESTS
SPOP
0.9537
More...
Q96H15
T-cell immunoglobulin and mucin domain-containing protein 4
DEG_SPOP_SBC_1
240:244
VESTS
SPOP
0.993
More...
P13611
Versican core protein
DEG_SPOP_SBC_1
2290:2294
VESTS
SPOP
0.6598
More...
Showing 1 to 12 of 12 entries
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