DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VFSSS
Uniprot ID:
P49790
Source protein:
Nuclear pore complex protein Nup153
Source gene:
NUP153
Class:
DEG_SPOP_SBC_1
Location:
1454:1458
E3 ligase:
SPOP
DEGRON score:
0.9973
ASA_SCORE:
75.02
COIL:
0.8532
CONS_SCORE:
0.3386
DSS_SCORE:
0.4271
HELIX:
0.0288
FCONS_SCORE:
0.9071
RIG_SCORE:
0.6977
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1457C
TCGA-56-7822
LUSC
TCGA
VFSSS
DEG_SPOP_SBC_1
0.8652
p.S1457C
DO26638
LUSC
ICGC
VFSSS
DEG_SPOP_SBC_1
0.8652
p.F1462L
TCGA-AP-A0LM
UCEC
TCGA
VFSSS
DEG_SPOP_SBC_1
0.2222
p.F1462L
DO1101
BRCA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.F1462L
DO43306
UCEC
ICGC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
SIDM01219
Non-Small Cell Lung Carcinoma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
SIDM00607
Glioblastoma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
SIDM00251
Gastric Carcinoma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
SIDM00564
Ovarian Carcinoma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
SIDM01575
Plasma Cell Myeloma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
SIDM00162
Biliary Tract Carcinoma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
TGBC11TKB
stomach
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
LU-99A
lung
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
KNS-42
central_nervous_system
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.G1466C
OVISE
ovary
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.S1462L
SIDM00895
B-Cell Non-Hodgkin's Lymphoma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.S1462L
BC-3
haematopoietic_and_lymphoid_tissue
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.V1454M
ACH-000980
Lung Cancer
CCLE
VFSSS
DEG_SPOP_SBC_1
0.7208
p.V1454M
NCI-H1155
lung
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.7208
Drug responses associated with NUP153 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VFSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P15924
Desmoplakin
DEG_SPOP_SBC_1
2581:2585
VFSSS
SPOP
0.8811
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1454:1458
VFSSS
SPOP
0.9973
More...
Q07889
Son of sevenless homolog 1
DEG_SPOP_SBC_1
1225:1229
VFSSS
SPOP
0.9959
More...
Q16720
Plasma membrane calcium-transporting ATPase 3
DEG_SPOP_SBC_1
1204:1208
VFSSS
SPOP
0.8618
More...
Q6DN14
Multiple C2 and transmembrane domain-containing protein 1
DEG_SPOP_SBC_1
91:95
VFSSS
SPOP
0.9709
More...
Q86YV5
Inactive tyrosine-protein kinase PRAG1
DEG_SPOP_SBC_1
875:879
VFSSS
SPOP
0.9995
More...
Q9NV56
MRG/MORF4L-binding protein
DEG_SPOP_SBC_1
143:147
VFSSS
SPOP
0.9763
More...
Q9UPU5
Ubiquitin carboxyl-terminal hydrolase 24
DEG_SPOP_SBC_1
1058:1062
VFSSS
SPOP
0.9322
More...
P09630
Homeobox protein Hox-C6
DEG_SPOP_SBC_1
62:66
VFSSS
SPOP
0.9955
More...
Q7Z408
CUB and sushi domain-containing protein 2
DEG_SPOP_SBC_1
2911:2915
VFSSS
SPOP
0.6868
More...
Q5T5J6
Transcriptional protein SWT1
DEG_SPOP_SBC_1
740:744
VFSSS
SPOP
0.9982
More...
Q6ZN01
MEF2-activating motif and SAP domain-containing transcriptional regulator
DEG_SPOP_SBC_1
350:354
VFSSS
SPOP
0.9978
More...
Q96ND0
Protein FAM210A
DEG_SPOP_SBC_1
95:99
VFSSS
SPOP
0.9987
More...