DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VFSSS
Uniprot ID:
Q7Z408
Source protein:
CUB and sushi domain-containing protein 2
Source gene:
CSMD2
Class:
DEG_SPOP_SBC_1
Location:
2911:2915
E3 ligase:
SPOP
DEGRON score:
0.6868
ASA_SCORE:
54.44
COIL:
0.7268
CONS_SCORE:
0.3613
DSS_SCORE:
0.059
HELIX:
0.0078
FCONS_SCORE:
1.0055
RIG_SCORE:
0.8742
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V2917I
TCGA-AA-3713
COAD
TCGA
VFSSS
DEG_SPOP_SBC_1
0.2778
p.R2903Q
TCGA-AX-A3FT
UCEC
TCGA
VFSSS
DEG_SPOP_SBC_1
0.1111
p.R2903Q
TCGA-Z2-A8RT
SKCM
TCGA
VFSSS
DEG_SPOP_SBC_1
0.1111
p.G2923R
TCGA-DA-A1HV
SKCM
TCGA
VFSSS
DEG_SPOP_SBC_1
0.1111
p.D2907Y
DO5696
BRCA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.2222
p.Q2901L
DO228815
LICA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.0556
p.R2908S
DO229032
LICA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.25
p.T2905K
DO229045
LICA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.1667
p.G2902V
DO231524
LINC
ICGC
VFSSS
DEG_SPOP_SBC_1
0.0833
p.P2921L
DO23515
LIRI
ICGC
VFSSS
DEG_SPOP_SBC_1
0.1667
p.P2921L
SIDM00582
Pancreatic Carcinoma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.1667
p.P2921L
ACH-000281
Pancreatic Cancer
CCLE
VFSSS
DEG_SPOP_SBC_1
0.1667
p.P2921L
KP-2
pancreas
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.1667
p.P2924T
DO27025
LUSC
ICGC
VFSSS
DEG_SPOP_SBC_1
0.0833
p.D2903N
DO220889
MELA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.1111
p.H2920Y
DO222702
MELA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.1944
p.H2920D
DO31320
OV
ICGC
VFSSS
DEG_SPOP_SBC_1
0.1944
p.P2924L
DO36342
PRAD
ICGC
VFSSS
DEG_SPOP_SBC_1
0.0833
p.P2924L
SIDM00434
Plasma Cell Myeloma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.0833
p.P2924L
ACH-000745
Myeloma
CCLE
VFSSS
DEG_SPOP_SBC_1
0.0833
p.P2924L
MOLP-8
haematopoietic_and_lymphoid_tissue
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.0833
p.L2915F
SIDM00889
Cervical Carcinoma
GDSC
VFSSS
DEG_SPOP_SBC_1
0.6981
p.L2915F
C-33-A
cervix
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.6981
p.G2923E
Sarc9371
bone
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.1111
p.G2912E
A375
skin
COSMIC
VFSSS
DEG_SPOP_SBC_1
0.7199
Drug responses associated with CSMD2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VFSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P15924
Desmoplakin
DEG_SPOP_SBC_1
2581:2585
VFSSS
SPOP
0.8811
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1454:1458
VFSSS
SPOP
0.9973
More...
Q07889
Son of sevenless homolog 1
DEG_SPOP_SBC_1
1225:1229
VFSSS
SPOP
0.9959
More...
Q16720
Plasma membrane calcium-transporting ATPase 3
DEG_SPOP_SBC_1
1204:1208
VFSSS
SPOP
0.8618
More...
Q6DN14
Multiple C2 and transmembrane domain-containing protein 1
DEG_SPOP_SBC_1
91:95
VFSSS
SPOP
0.9709
More...
Q86YV5
Inactive tyrosine-protein kinase PRAG1
DEG_SPOP_SBC_1
875:879
VFSSS
SPOP
0.9995
More...
Q9NV56
MRG/MORF4L-binding protein
DEG_SPOP_SBC_1
143:147
VFSSS
SPOP
0.9763
More...
Q9UPU5
Ubiquitin carboxyl-terminal hydrolase 24
DEG_SPOP_SBC_1
1058:1062
VFSSS
SPOP
0.9322
More...
P09630
Homeobox protein Hox-C6
DEG_SPOP_SBC_1
62:66
VFSSS
SPOP
0.9955
More...
Q7Z408
CUB and sushi domain-containing protein 2
DEG_SPOP_SBC_1
2911:2915
VFSSS
SPOP
0.6868
More...
Q5T5J6
Transcriptional protein SWT1
DEG_SPOP_SBC_1
740:744
VFSSS
SPOP
0.9982
More...
Q6ZN01
MEF2-activating motif and SAP domain-containing transcriptional regulator
DEG_SPOP_SBC_1
350:354
VFSSS
SPOP
0.9978
More...
Q96ND0
Protein FAM210A
DEG_SPOP_SBC_1
95:99
VFSSS
SPOP
0.9987
More...