DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VFSSS
Uniprot ID:
Q9UPU5
Source protein:
Ubiquitin carboxyl-terminal hydrolase 24
Source gene:
USP24
Class:
DEG_SPOP_SBC_1
Location:
1058:1062
E3 ligase:
SPOP
DEGRON score:
0.9322
ASA_SCORE:
66.18
COIL:
0.6966
CONS_SCORE:
0.2947
DSS_SCORE:
0.3974
HELIX:
0.23
FCONS_SCORE:
0.8521
RIG_SCORE:
0.6653
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P1072H
TCGA-FS-A1Z4
SKCM
TCGA
VFSSS
DEG_SPOP_SBC_1
0.0556
p.P1072H
DO37462
SKCM
ICGC
VFSSS
DEG_SPOP_SBC_1
0.0556
p.A1048P
DO219052
BLCA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.0556
p.D1061N
DO228881
LICA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.6932
p.S1052N
DO231724
LINC
ICGC
VFSSS
DEG_SPOP_SBC_1
0.1667
p.T1049A
DO233424
RECA
ICGC
VFSSS
DEG_SPOP_SBC_1
0.0833
Drug responses associated with USP24 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VFSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P15924
Desmoplakin
DEG_SPOP_SBC_1
2581:2585
VFSSS
SPOP
0.8811
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1454:1458
VFSSS
SPOP
0.9973
More...
Q07889
Son of sevenless homolog 1
DEG_SPOP_SBC_1
1225:1229
VFSSS
SPOP
0.9959
More...
Q16720
Plasma membrane calcium-transporting ATPase 3
DEG_SPOP_SBC_1
1204:1208
VFSSS
SPOP
0.8618
More...
Q6DN14
Multiple C2 and transmembrane domain-containing protein 1
DEG_SPOP_SBC_1
91:95
VFSSS
SPOP
0.9709
More...
Q86YV5
Inactive tyrosine-protein kinase PRAG1
DEG_SPOP_SBC_1
875:879
VFSSS
SPOP
0.9995
More...
Q9NV56
MRG/MORF4L-binding protein
DEG_SPOP_SBC_1
143:147
VFSSS
SPOP
0.9763
More...
Q9UPU5
Ubiquitin carboxyl-terminal hydrolase 24
DEG_SPOP_SBC_1
1058:1062
VFSSS
SPOP
0.9322
More...
P09630
Homeobox protein Hox-C6
DEG_SPOP_SBC_1
62:66
VFSSS
SPOP
0.9955
More...
Q7Z408
CUB and sushi domain-containing protein 2
DEG_SPOP_SBC_1
2911:2915
VFSSS
SPOP
0.6868
More...
Q5T5J6
Transcriptional protein SWT1
DEG_SPOP_SBC_1
740:744
VFSSS
SPOP
0.9982
More...
Q6ZN01
MEF2-activating motif and SAP domain-containing transcriptional regulator
DEG_SPOP_SBC_1
350:354
VFSSS
SPOP
0.9978
More...
Q96ND0
Protein FAM210A
DEG_SPOP_SBC_1
95:99
VFSSS
SPOP
0.9987
More...