DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKSSS
Uniprot ID:
P29375
Source protein:
Lysine-specific demethylase 5A
Source gene:
KDM5A
Class:
DEG_SPOP_SBC_1
Location:
1363:1367
E3 ligase:
SPOP
DEGRON score:
0.9347
ASA_SCORE:
87.58
COIL:
0.7984
CONS_SCORE:
0.2467
DSS_SCORE:
0.4017
HELIX:
0.1676
FCONS_SCORE:
0.9854
RIG_SCORE:
0.6818
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1361G
TCGA-A8-A0AB
BRCA
TCGA
VKSSS
DEG_SPOP_SBC_1
0.2778
p.A1361G
DO5877
BRCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2778
p.E1377V
TCGA-CK-4951
COAD
TCGA
VKSSS
DEG_SPOP_SBC_1
0.0556
p.E1377V
DO10582
COAD
ICGC
VKSSS
DEG_SPOP_SBC_1
0.0556
p.E1377V
DO233298
NACA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.0556
p.P1371S
TCGA-CV-6003
HNSC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.2222
p.P1371S
DO15639
HNSC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.S1366A
TCGA-Z2-A8RT
SKCM
TCGA
VKSSS
DEG_SPOP_SBC_1
0.7588
p.S1366A
DO51301
SKCM
ICGC
VKSSS
DEG_SPOP_SBC_1
0.7588
p.D1359G
DO222884
COCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.L1373P
SIDM02029
Colorectal Carcinoma
GDSC
VKSSS
DEG_SPOP_SBC_1
0.1667
p.L1373V
SIDM00114
Non-Small Cell Lung Carcinoma
GDSC
VKSSS
DEG_SPOP_SBC_1
0.1667
p.L1373V
H513
pleura
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.1667
Drug responses associated with KDM5A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60882
Matrix metalloproteinase-20
DEG_SPOP_SBC_1
475:479
VKSSS
SPOP
0.6246
More...
O75952
Calcium-binding tyrosine phosphorylation-regulated protein
DEG_SPOP_SBC_1
465:469
VKSSS
SPOP
0.975
More...
P29375
Lysine-specific demethylase 5A
DEG_SPOP_SBC_1
1363:1367
VKSSS
SPOP
0.9347
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
360:364
VKSSS
SPOP
0.8251
More...
Q2LD37
Transmembrane protein KIAA1109
DEG_SPOP_SBC_1
2319:2323
VKSSS
SPOP
0.9728
More...
Q5CZC0
Fibrous sheath-interacting protein 2
DEG_SPOP_SBC_1
3936:3940
VKSSS
SPOP
0.9325
More...
Q5U651
Ras-interacting protein 1
DEG_SPOP_SBC_1
45:49
VKSSS
SPOP
0.9869
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
686:690
VKSSS
SPOP
0.9003
More...
Q8IVL0
Neuron navigator 3
DEG_SPOP_SBC_1
1269:1273
VKSSS
SPOP
0.9831
More...
Q9UMS6
Synaptopodin-2
DEG_SPOP_SBC_1
765:769
VKSSS
SPOP
0.9977
More...
Q2KJY2
Kinesin-like protein KIF26B
DEG_SPOP_SBC_1
1532:1536
VKSSS
SPOP
0.9092
More...
Q5JRM2
Uncharacterized protein CXorf66
DEG_SPOP_SBC_1
303:307
VKSSS
SPOP
0.9382
More...