DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKSSS
Uniprot ID:
Q5JRM2
Source protein:
Uncharacterized protein CXorf66
Source gene:
CXorf66
Class:
DEG_SPOP_SBC_1
Location:
303:307
E3 ligase:
SPOP
DEGRON score:
0.9382
ASA_SCORE:
79.6
COIL:
0.8312
CONS_SCORE:
0.4611
DSS_SCORE:
0.4963
HELIX:
0.0722
FCONS_SCORE:
0.9875
RIG_SCORE:
0.662
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K304N
TCGA-46-3768
LUSC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.5806
p.K304N
DO26466
LUSC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.5806
p.T294S
TCGA-66-2727
LUSC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.0833
p.T294S
DO26478
LUSC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.0833
p.S309F
TCGA-AB-2833
LAML
TCGA
VKSSS
DEG_SPOP_SBC_1
0.2778
p.S309F
TCGA-BF-AAP2
SKCM
TCGA
VKSSS
DEG_SPOP_SBC_1
0.2778
p.S309F
DO21679
LAML
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2778
p.S309F
DO219466
SKCM
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2778
p.S309Y
TCGA-D6-8569
HNSC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.2778
p.S309Y
DO14454
HNSC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2778
p.R311C
TCGA-EB-A41B
SKCM
TCGA
VKSSS
DEG_SPOP_SBC_1
0.2222
p.R311C
TCGA-GN-A266
SKCM
TCGA
VKSSS
DEG_SPOP_SBC_1
0.2222
p.R311C
TCGA-Z2-A8RT
SKCM
TCGA
VKSSS
DEG_SPOP_SBC_1
0.2222
p.R311C
DO233777
GACA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.R311C
DO229465
SKCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.R311C
DO37611
SKCM
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.R311C
DO37432
SKCM
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.R311C
DO51301
SKCM
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.Q295K
TCGA-HD-8635
HNSC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.1111
p.Q295K
DO14574
HNSC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1111
p.D314V
DO217931
BRCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1389
p.R311H
DO230331
COCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.K312N
DO48212
ESCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.3056
p.S301C
DO233871
GACA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2778
p.V299D
DO231127
LUSC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.S307F
DO220873
MELA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.7982
p.S307F
SIDM00663
Melanoma
GDSC
VKSSS
DEG_SPOP_SBC_1
0.7982
p.S307F
ACH-000814
Skin Cancer
CCLE
VKSSS
DEG_SPOP_SBC_1
0.7982
p.N296T
SIDM02059
Colorectal Carcinoma
GDSC
VKSSS
DEG_SPOP_SBC_1
0.1389
p.K302R
SIDM00336
Melanoma
GDSC
VKSSS
DEG_SPOP_SBC_1
0.3056
p.K302R
ACH-000881
Skin Cancer
CCLE
VKSSS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with CXorf66 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60882
Matrix metalloproteinase-20
DEG_SPOP_SBC_1
475:479
VKSSS
SPOP
0.6246
More...
O75952
Calcium-binding tyrosine phosphorylation-regulated protein
DEG_SPOP_SBC_1
465:469
VKSSS
SPOP
0.975
More...
P29375
Lysine-specific demethylase 5A
DEG_SPOP_SBC_1
1363:1367
VKSSS
SPOP
0.9347
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
360:364
VKSSS
SPOP
0.8251
More...
Q2LD37
Transmembrane protein KIAA1109
DEG_SPOP_SBC_1
2319:2323
VKSSS
SPOP
0.9728
More...
Q5CZC0
Fibrous sheath-interacting protein 2
DEG_SPOP_SBC_1
3936:3940
VKSSS
SPOP
0.9325
More...
Q5U651
Ras-interacting protein 1
DEG_SPOP_SBC_1
45:49
VKSSS
SPOP
0.9869
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
686:690
VKSSS
SPOP
0.9003
More...
Q8IVL0
Neuron navigator 3
DEG_SPOP_SBC_1
1269:1273
VKSSS
SPOP
0.9831
More...
Q9UMS6
Synaptopodin-2
DEG_SPOP_SBC_1
765:769
VKSSS
SPOP
0.9977
More...
Q2KJY2
Kinesin-like protein KIF26B
DEG_SPOP_SBC_1
1532:1536
VKSSS
SPOP
0.9092
More...
Q5JRM2
Uncharacterized protein CXorf66
DEG_SPOP_SBC_1
303:307
VKSSS
SPOP
0.9382
More...