DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKSSS
Uniprot ID:
Q8IVL0
Source protein:
Neuron navigator 3
Source gene:
NAV3
Class:
DEG_SPOP_SBC_1
Location:
1269:1273
E3 ligase:
SPOP
DEGRON score:
0.9831
ASA_SCORE:
79.46
COIL:
0.9062
CONS_SCORE:
0.3403
DSS_SCORE:
0.6342
HELIX:
0.0362
FCONS_SCORE:
0.944
RIG_SCORE:
0.6332
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1283E
TCGA-56-8628
LUSC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.0556
p.A1283E
DO45433
LUSC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.0556
p.T1266N
TCGA-66-2763
LUSC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.25
p.T1266N
DO27620
LUSC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.25
p.S1273L
TCGA-75-6214
LUAD
TCGA
VKSSS
DEG_SPOP_SBC_1
0.7667
p.S1273L
TCGA-UY-A78P
BLCA
TCGA
VKSSS
DEG_SPOP_SBC_1
0.7667
p.S1273L
DO219036
BLCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.7667
p.S1273L
DO24830
LUAD
ICGC
VKSSS
DEG_SPOP_SBC_1
0.7667
p.V1269M
TCGA-A5-A0R8
UCEC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.7208
p.V1269M
DO42584
UCEC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.7208
p.K1270E
TCGA-AP-A056
UCEC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.591
p.K1270E
DO43971
UCEC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.591
p.L1282S
TCGA-DD-AADC
LIHC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.0833
p.L1282S
DO52230
LIHC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.0833
p.P1278H
TCGA-EE-A2M8
SKCM
TCGA
VKSSS
DEG_SPOP_SBC_1
0.1944
p.P1278H
DO38075
SKCM
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1944
p.S1262C
TCGA-G2-A3IE
BLCA
TCGA
VKSSS
DEG_SPOP_SBC_1
0.1389
p.S1262C
DO767
BLCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1389
p.S1262C
DO48222
ESCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1389
p.S1260C
TCGA-HG-A2PA
CESC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.0833
p.S1260C
DO6311
CESC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.0833
p.S1262F
TCGA-UY-A78O
BLCA
TCGA
VKSSS
DEG_SPOP_SBC_1
0.1389
p.S1262F
DO219035
BLCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1389
p.L1282F
DO232019
LICA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.0833
p.S1279N
DO231086
LUSC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1667
p.S1272Y
SIDM01116
Non-Small Cell Lung Carcinoma
GDSC
VKSSS
DEG_SPOP_SBC_1
0.712
p.S1272Y
ACH-000789
Lung Cancer
CCLE
VKSSS
DEG_SPOP_SBC_1
0.712
p.S1272Y
NCI-H810
lung
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.712
p.V1274A
SIDM00537
Colorectal Carcinoma
GDSC
VKSSS
DEG_SPOP_SBC_1
0.3056
p.V1274A
ACH-001345
Colon/Colorectal Cancer
CCLE
VKSSS
DEG_SPOP_SBC_1
0.3056
p.V1274A
GP5d
large_intestine
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.3056
p.P1264H
ACH-000568
Breast Cancer
CCLE
VKSSS
DEG_SPOP_SBC_1
0.1944
p.T1280I
ACH-000776
Brain Cancer
CCLE
VKSSS
DEG_SPOP_SBC_1
0.1389
p.T1272M
TYK-nu
ovary
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.7423
p.S1280N
BV-173
haematopoietic_and_lymphoid_tissue
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.1389
p.D1273Y
NCI-H128
lung
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.7325
p.L1269I
CW-2
large_intestine
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.7174
Drug responses associated with NAV3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60882
Matrix metalloproteinase-20
DEG_SPOP_SBC_1
475:479
VKSSS
SPOP
0.6246
More...
O75952
Calcium-binding tyrosine phosphorylation-regulated protein
DEG_SPOP_SBC_1
465:469
VKSSS
SPOP
0.975
More...
P29375
Lysine-specific demethylase 5A
DEG_SPOP_SBC_1
1363:1367
VKSSS
SPOP
0.9347
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
360:364
VKSSS
SPOP
0.8251
More...
Q2LD37
Transmembrane protein KIAA1109
DEG_SPOP_SBC_1
2319:2323
VKSSS
SPOP
0.9728
More...
Q5CZC0
Fibrous sheath-interacting protein 2
DEG_SPOP_SBC_1
3936:3940
VKSSS
SPOP
0.9325
More...
Q5U651
Ras-interacting protein 1
DEG_SPOP_SBC_1
45:49
VKSSS
SPOP
0.9869
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
686:690
VKSSS
SPOP
0.9003
More...
Q8IVL0
Neuron navigator 3
DEG_SPOP_SBC_1
1269:1273
VKSSS
SPOP
0.9831
More...
Q9UMS6
Synaptopodin-2
DEG_SPOP_SBC_1
765:769
VKSSS
SPOP
0.9977
More...
Q2KJY2
Kinesin-like protein KIF26B
DEG_SPOP_SBC_1
1532:1536
VKSSS
SPOP
0.9092
More...
Q5JRM2
Uncharacterized protein CXorf66
DEG_SPOP_SBC_1
303:307
VKSSS
SPOP
0.9382
More...