DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKSSS
Uniprot ID:
Q9UMS6
Source protein:
Synaptopodin-2
Source gene:
SYNPO2
Class:
DEG_SPOP_SBC_1
Location:
765:769
E3 ligase:
SPOP
DEGRON score:
0.9977
ASA_SCORE:
95.72
COIL:
0.9472
CONS_SCORE:
0.5321
DSS_SCORE:
0.5766
HELIX:
0.034
FCONS_SCORE:
0.843
RIG_SCORE:
0.5715
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V759L
TCGA-50-5930
LUAD
TCGA
VKSSS
DEG_SPOP_SBC_1
0.1667
p.V759L
DO25189
LUAD
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1667
p.T755I
TCGA-AA-A00N
COAD
TCGA
VKSSS
DEG_SPOP_SBC_1
0.5
p.T755I
DO9876
COAD
ICGC
VKSSS
DEG_SPOP_SBC_1
0.5
p.P757H
TCGA-AJ-A3EL
UCEC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.1111
p.P757H
DO41542
UCEC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1111
p.A760T
DO231549
LINC
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1944
p.A764V
DO220865
MELA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.3056
p.T770S
NCI-H128
lung
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.75
p.P755S
Mewo
skin
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.5
Drug responses associated with SYNPO2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60882
Matrix metalloproteinase-20
DEG_SPOP_SBC_1
475:479
VKSSS
SPOP
0.6246
More...
O75952
Calcium-binding tyrosine phosphorylation-regulated protein
DEG_SPOP_SBC_1
465:469
VKSSS
SPOP
0.975
More...
P29375
Lysine-specific demethylase 5A
DEG_SPOP_SBC_1
1363:1367
VKSSS
SPOP
0.9347
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
360:364
VKSSS
SPOP
0.8251
More...
Q2LD37
Transmembrane protein KIAA1109
DEG_SPOP_SBC_1
2319:2323
VKSSS
SPOP
0.9728
More...
Q5CZC0
Fibrous sheath-interacting protein 2
DEG_SPOP_SBC_1
3936:3940
VKSSS
SPOP
0.9325
More...
Q5U651
Ras-interacting protein 1
DEG_SPOP_SBC_1
45:49
VKSSS
SPOP
0.9869
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
686:690
VKSSS
SPOP
0.9003
More...
Q8IVL0
Neuron navigator 3
DEG_SPOP_SBC_1
1269:1273
VKSSS
SPOP
0.9831
More...
Q9UMS6
Synaptopodin-2
DEG_SPOP_SBC_1
765:769
VKSSS
SPOP
0.9977
More...
Q2KJY2
Kinesin-like protein KIF26B
DEG_SPOP_SBC_1
1532:1536
VKSSS
SPOP
0.9092
More...
Q5JRM2
Uncharacterized protein CXorf66
DEG_SPOP_SBC_1
303:307
VKSSS
SPOP
0.9382
More...