DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKSSS
Uniprot ID:
Q2KJY2
Source protein:
Kinesin-like protein KIF26B
Source gene:
KIF26B
Class:
DEG_SPOP_SBC_1
Location:
1532:1536
E3 ligase:
SPOP
DEGRON score:
0.9092
ASA_SCORE:
82.16
COIL:
0.8262
CONS_SCORE:
0.3848
DSS_SCORE:
0.5575
HELIX:
0.1206
FCONS_SCORE:
1.17
RIG_SCORE:
0.6536
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L1537I
TCGA-DF-A2KN
UCEC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.3056
p.P1538L
TCGA-EY-A215
UCEC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.2778
p.H1527Q
TCGA-NC-A5HP
LUSC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.1944
p.S1545N
TCGA-SJ-A6ZI
UCEC
TCGA
VKSSS
DEG_SPOP_SBC_1
0.0833
p.S1538R
DO219093
BLCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2778
p.S1532L
DO224768
BRCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.7667
p.E1539K
DO7878
COAD
ICGC
VKSSS
DEG_SPOP_SBC_1
0.25
p.R1522W
DO227990
COCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.0556
p.S1543F
DO220876
MELA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.25
p.S1543F
DO222363
MELA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.25
p.S1543F
DO37839
SKCM
ICGC
VKSSS
DEG_SPOP_SBC_1
0.25
p.V1544M
DO38443
STAD
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1111
p.E1525D
DO229272
THCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.1389
p.G1528S
DO229087
THCA
ICGC
VKSSS
DEG_SPOP_SBC_1
0.2222
p.R1546W
SIDM00346
Chronic Myelogenous Leukemia
GDSC
VKSSS
DEG_SPOP_SBC_1
0.0556
p.R1546W
SIDM01043
Other Sarcomas
GDSC
VKSSS
DEG_SPOP_SBC_1
0.0556
p.S1536N
SIDM00951
T-Lymphoblastic Leukemia
GDSC
VKSSS
DEG_SPOP_SBC_1
0.7069
p.S1536N
ACH-002222
Leukemia
CCLE
VKSSS
DEG_SPOP_SBC_1
0.7069
p.S1536N
CTV-1
haematopoietic_and_lymphoid_tissue
COSMIC
VKSSS
DEG_SPOP_SBC_1
0.7069
Drug responses associated with KIF26B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60882
Matrix metalloproteinase-20
DEG_SPOP_SBC_1
475:479
VKSSS
SPOP
0.6246
More...
O75952
Calcium-binding tyrosine phosphorylation-regulated protein
DEG_SPOP_SBC_1
465:469
VKSSS
SPOP
0.975
More...
P29375
Lysine-specific demethylase 5A
DEG_SPOP_SBC_1
1363:1367
VKSSS
SPOP
0.9347
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
360:364
VKSSS
SPOP
0.8251
More...
Q2LD37
Transmembrane protein KIAA1109
DEG_SPOP_SBC_1
2319:2323
VKSSS
SPOP
0.9728
More...
Q5CZC0
Fibrous sheath-interacting protein 2
DEG_SPOP_SBC_1
3936:3940
VKSSS
SPOP
0.9325
More...
Q5U651
Ras-interacting protein 1
DEG_SPOP_SBC_1
45:49
VKSSS
SPOP
0.9869
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
686:690
VKSSS
SPOP
0.9003
More...
Q8IVL0
Neuron navigator 3
DEG_SPOP_SBC_1
1269:1273
VKSSS
SPOP
0.9831
More...
Q9UMS6
Synaptopodin-2
DEG_SPOP_SBC_1
765:769
VKSSS
SPOP
0.9977
More...
Q2KJY2
Kinesin-like protein KIF26B
DEG_SPOP_SBC_1
1532:1536
VKSSS
SPOP
0.9092
More...
Q5JRM2
Uncharacterized protein CXorf66
DEG_SPOP_SBC_1
303:307
VKSSS
SPOP
0.9382
More...