DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VPTTT
Uniprot ID:
P98171
Source protein:
Rho GTPase-activating protein 4
Source gene:
ARHGAP4
Class:
DEG_SPOP_SBC_1
Location:
200:204
E3 ligase:
SPOP
DEGRON score:
0.9213
ASA_SCORE:
83.22
COIL:
0.9174
CONS_SCORE:
0.2729
DSS_SCORE:
0.6786
HELIX:
0.0542
FCONS_SCORE:
0.8494
RIG_SCORE:
0.6527
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G211R
TCGA-55-7281
LUAD
TCGA
VPTTT
DEG_SPOP_SBC_1
0.1389
p.R214C
TCGA-77-A5GH
LUSC
TCGA
VPTTT
DEG_SPOP_SBC_1
0.0556
p.R214C
TCGA-KN-8428
KICH
TCGA
VPTTT
DEG_SPOP_SBC_1
0.0556
p.S199I
TCGA-D1-A103
UCEC
TCGA
VPTTT
DEG_SPOP_SBC_1
0.75
p.A205S
TCGA-EL-A4K7
THCA
TCGA
VPTTT
DEG_SPOP_SBC_1
0.3056
p.E192K
TCGA-WE-A8K4
SKCM
TCGA
VPTTT
DEG_SPOP_SBC_1
0.1111
p.R193C
DO220484
KICH
ICGC
VPTTT
DEG_SPOP_SBC_1
0.1389
p.R193C
DO45452
LUSC
ICGC
VPTTT
DEG_SPOP_SBC_1
0.1389
p.G190R
DO25985
LUAD
ICGC
VPTTT
DEG_SPOP_SBC_1
0.0556
p.S196F
DO47389
SKCM
ICGC
VPTTT
DEG_SPOP_SBC_1
0.2222
p.R207L
DO37946
SKCM
ICGC
VPTTT
DEG_SPOP_SBC_1
0.25
p.L197I
DO38075
SKCM
ICGC
VPTTT
DEG_SPOP_SBC_1
0.25
p.R214H
SIDM00680
Colorectal Carcinoma
GDSC
VPTTT
DEG_SPOP_SBC_1
0.0556
p.R214H
SIDM01263
T-Lymphoblastic Leukemia
GDSC
VPTTT
DEG_SPOP_SBC_1
0.0556
p.R214H
SIDM00220
Ovarian Carcinoma
GDSC
VPTTT
DEG_SPOP_SBC_1
0.0556
p.R214H
ACH-000957
Colon/Colorectal Cancer
CCLE
VPTTT
DEG_SPOP_SBC_1
0.0556
p.R214H
ACH-000962
Ovarian Cancer
CCLE
VPTTT
DEG_SPOP_SBC_1
0.0556
p.R214H
ACH-001145
Ovarian Cancer
CCLE
VPTTT
DEG_SPOP_SBC_1
0.0556
p.R214H
OC-314
ovary
COSMIC
VPTTT
DEG_SPOP_SBC_1
0.0556
p.R214H
LS-180
large_intestine
COSMIC
VPTTT
DEG_SPOP_SBC_1
0.0556
p.P201S
SIDM00861
Ovarian Carcinoma
GDSC
VPTTT
DEG_SPOP_SBC_1
0.5641
p.P201S
ACH-000906
Ovarian Cancer
CCLE
VPTTT
DEG_SPOP_SBC_1
0.5641
p.P201S
ES-2
ovary
COSMIC
VPTTT
DEG_SPOP_SBC_1
0.5641
p.R193H
LS-180
large_intestine
COSMIC
VPTTT
DEG_SPOP_SBC_1
0.1389
p.R193H
OC-314
ovary
COSMIC
VPTTT
DEG_SPOP_SBC_1
0.1389
p.S199R
BPH-1
prostate
COSMIC
VPTTT
DEG_SPOP_SBC_1
0.75
Drug responses associated with ARHGAP4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75829
Leukocyte cell-derived chemotaxin 1
DEG_SPOP_SBC_1
221:225
VPTTT
SPOP
0.9724
More...
P22105
Tenascin-X
DEG_SPOP_SBC_1
2834:2838
VPTTT
SPOP
0.8867
More...
P98171
Rho GTPase-activating protein 4
DEG_SPOP_SBC_1
200:204
VPTTT
SPOP
0.9213
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
5806:5810
VPTTT
SPOP
0.9863
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
11618:11622
VPTTT
SPOP
0.7076
More...
Q96D42
Hepatitis A virus cellular receptor 1
DEG_SPOP_SBC_1
150:154
VPTTT
SPOP
0.9885
More...
Q96D42
Hepatitis A virus cellular receptor 1
DEG_SPOP_SBC_1
161:165
VPTTT
SPOP
0.986
More...
Q96D42
Hepatitis A virus cellular receptor 1
DEG_SPOP_SBC_1
190:194
VPTTT
SPOP
0.9092
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2051:2055
VPTTT
SPOP
0.9951
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3308:3312
VPTTT
SPOP
0.993
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3865:3869
VPTTT
SPOP
0.9882
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4593:4597
VPTTT
SPOP
0.9609
More...
Q9UL68
Myelin transcription factor 1-like protein
DEG_SPOP_SBC_1
625:629
VPTTT
SPOP
0.8307
More...
Q9UPN9
E3 ubiquitin-protein ligase TRIM33
DEG_SPOP_SBC_1
543:547
VPTTT
SPOP
0.7751
More...
O94880
PHD finger protein 14
DEG_SPOP_SBC_1
166:170
VPTTT
SPOP
0.991
More...
Q8WW62
Transmembrane emp24 domain-containing protein 6
DEG_SPOP_SBC_1
229:233
VPTTT
SPOP
0.7106
More...