DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VPTTT
Uniprot ID:
Q8WW62
Source protein:
Transmembrane emp24 domain-containing protein 6
Source gene:
TMED6
Class:
DEG_SPOP_SBC_1
Location:
229:233
E3 ligase:
SPOP
DEGRON score:
0.7106
ASA_SCORE:
88.46
COIL:
0.946
CONS_SCORE:
0.4401
DSS_SCORE:
0.2086
HELIX:
0.0182
FCONS_SCORE:
0.7676
RIG_SCORE:
0.7993
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R225H
TCGA-AX-A06H
UCEC
TCGA
VPTTT
DEG_SPOP_SBC_1
0.2222
p.R225H
TCGA-B5-A3FC
UCEC
TCGA
VPTTT
DEG_SPOP_SBC_1
0.2222
p.R225H
DO233267
GACA
ICGC
VPTTT
DEG_SPOP_SBC_1
0.2222
p.R225H
DO43530
UCEC
ICGC
VPTTT
DEG_SPOP_SBC_1
0.2222
p.R225H
DO41871
UCEC
ICGC
VPTTT
DEG_SPOP_SBC_1
0.2222
p.K236N
TCGA-B5-A0JY
UCEC
TCGA
VPTTT
DEG_SPOP_SBC_1
0.3611
p.K236N
DO43041
UCEC
ICGC
VPTTT
DEG_SPOP_SBC_1
0.3611
p.F222V
TCGA-ZF-A9RC
BLCA
TCGA
VPTTT
DEG_SPOP_SBC_1
0.1389
p.F222V
DO219068
BLCA
ICGC
VPTTT
DEG_SPOP_SBC_1
0.1389
p.L223S
DO233884
GACA
ICGC
VPTTT
DEG_SPOP_SBC_1
0.1667
p.T232N
DO228986
LICA
ICGC
VPTTT
DEG_SPOP_SBC_1
0.7055
p.N228S
SIDM00392
Melanoma
GDSC
VPTTT
DEG_SPOP_SBC_1
0.3056
p.N228S
SIDM00429
B-Lymphoblastic Leukemia
GDSC
VPTTT
DEG_SPOP_SBC_1
0.3056
Drug responses associated with TMED6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75829
Leukocyte cell-derived chemotaxin 1
DEG_SPOP_SBC_1
221:225
VPTTT
SPOP
0.9724
More...
P22105
Tenascin-X
DEG_SPOP_SBC_1
2834:2838
VPTTT
SPOP
0.8867
More...
P98171
Rho GTPase-activating protein 4
DEG_SPOP_SBC_1
200:204
VPTTT
SPOP
0.9213
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
5806:5810
VPTTT
SPOP
0.9863
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
11618:11622
VPTTT
SPOP
0.7076
More...
Q96D42
Hepatitis A virus cellular receptor 1
DEG_SPOP_SBC_1
150:154
VPTTT
SPOP
0.9885
More...
Q96D42
Hepatitis A virus cellular receptor 1
DEG_SPOP_SBC_1
161:165
VPTTT
SPOP
0.986
More...
Q96D42
Hepatitis A virus cellular receptor 1
DEG_SPOP_SBC_1
190:194
VPTTT
SPOP
0.9092
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2051:2055
VPTTT
SPOP
0.9951
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3308:3312
VPTTT
SPOP
0.993
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3865:3869
VPTTT
SPOP
0.9882
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4593:4597
VPTTT
SPOP
0.9609
More...
Q9UL68
Myelin transcription factor 1-like protein
DEG_SPOP_SBC_1
625:629
VPTTT
SPOP
0.8307
More...
Q9UPN9
E3 ubiquitin-protein ligase TRIM33
DEG_SPOP_SBC_1
543:547
VPTTT
SPOP
0.7751
More...
O94880
PHD finger protein 14
DEG_SPOP_SBC_1
166:170
VPTTT
SPOP
0.991
More...
Q8WW62
Transmembrane emp24 domain-containing protein 6
DEG_SPOP_SBC_1
229:233
VPTTT
SPOP
0.7106
More...