DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VQSSS
Uniprot ID:
O14917
Source protein:
Protocadherin-17
Source gene:
PCDH17
Class:
DEG_SPOP_SBC_1
Location:
873:877
E3 ligase:
SPOP
DEGRON score:
0.8664
ASA_SCORE:
63.86
COIL:
0.5148
CONS_SCORE:
0.5704
DSS_SCORE:
0.6623
HELIX:
0.1352
FCONS_SCORE:
1.1585
RIG_SCORE:
0.6781
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S886I
TCGA-44-A4SS
LUAD
TCGA
VQSSS
DEG_SPOP_SBC_1
0.0833
p.S886I
TCGA-95-7567
LUAD
TCGA
VQSSS
DEG_SPOP_SBC_1
0.0833
p.S886I
DO229028
LICA
ICGC
VQSSS
DEG_SPOP_SBC_1
0.0833
p.S886I
DO24227
LUAD
ICGC
VQSSS
DEG_SPOP_SBC_1
0.0833
p.S886I
DO25564
LUAD
ICGC
VQSSS
DEG_SPOP_SBC_1
0.0833
p.F879L
TCGA-50-6593
LUAD
TCGA
VQSSS
DEG_SPOP_SBC_1
0.2778
p.F879L
DO24100
LUAD
ICGC
VQSSS
DEG_SPOP_SBC_1
0.2778
p.G867C
TCGA-55-6978
LUAD
TCGA
VQSSS
DEG_SPOP_SBC_1
0.1667
p.G867C
DO23625
LUAD
ICGC
VQSSS
DEG_SPOP_SBC_1
0.1667
p.Q874E
TCGA-63-A5MW
LUSC
TCGA
VQSSS
DEG_SPOP_SBC_1
0.5633
p.Q874E
DO219169
LUSC
ICGC
VQSSS
DEG_SPOP_SBC_1
0.5633
p.Q870P
TCGA-BH-A0BZ
BRCA
TCGA
VQSSS
DEG_SPOP_SBC_1
0.25
p.Q870P
DO1396
BRCA
ICGC
VQSSS
DEG_SPOP_SBC_1
0.25
p.D881N
TCGA-D3-A5GN
SKCM
TCGA
VQSSS
DEG_SPOP_SBC_1
0.2222
p.D881N
DO47317
SKCM
ICGC
VQSSS
DEG_SPOP_SBC_1
0.2222
p.M866L
TCGA-VQ-A8DU
STAD
TCGA
VQSSS
DEG_SPOP_SBC_1
0.1389
p.M866L
DO51752
STAD
ICGC
VQSSS
DEG_SPOP_SBC_1
0.1389
p.T878M
DO233749
GACA
ICGC
VQSSS
DEG_SPOP_SBC_1
0.3056
p.T878M
DO228851
MALY
ICGC
VQSSS
DEG_SPOP_SBC_1
0.3056
p.S886R
DO228359
LICA
ICGC
VQSSS
DEG_SPOP_SBC_1
0.0833
p.S876I
DO229045
LICA
ICGC
VQSSS
DEG_SPOP_SBC_1
0.7341
p.G867V
DO229009
LICA
ICGC
VQSSS
DEG_SPOP_SBC_1
0.1667
p.A885S
DO23544
LIRI
ICGC
VQSSS
DEG_SPOP_SBC_1
0.1111
p.R884K
DO229177
LMS
ICGC
VQSSS
DEG_SPOP_SBC_1
0.1389
p.L887V
SIDM00477
Esophageal Carcinoma
GDSC
VQSSS
DEG_SPOP_SBC_1
0.0556
p.L887V
ACH-000383
Esophageal Cancer
CCLE
VQSSS
DEG_SPOP_SBC_1
0.0556
p.L887V
OE33
oesophagus
COSMIC
VQSSS
DEG_SPOP_SBC_1
0.0556
p.R884I
SIDM00892
Breast Carcinoma
GDSC
VQSSS
DEG_SPOP_SBC_1
0.1389
p.R884I
ACH-000818
Breast Cancer
CCLE
VQSSS
DEG_SPOP_SBC_1
0.1389
p.R884I
BT-483
breast
COSMIC
VQSSS
DEG_SPOP_SBC_1
0.1389
p.F872L
SIDM00016
Neuroblastoma
GDSC
VQSSS
DEG_SPOP_SBC_1
0.3056
p.F872L
ACH-000446
Neuroblastoma
CCLE
VQSSS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with PCDH17 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VQSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14917
Protocadherin-17
DEG_SPOP_SBC_1
873:877
VQSSS
SPOP
0.8664
More...
P49792
E3 SUMO-protein ligase RanBP2
DEG_SPOP_SBC_1
926:930
VQSSS
SPOP
0.9967
More...
Q6ZW76
Ankyrin repeat and SAM domain-containing protein 3
DEG_SPOP_SBC_1
348:352
VQSSS
SPOP
0.9789
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
759:763
VQSSS
SPOP
0.9855
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
1045:1049
VQSSS
SPOP
0.9519
More...
Q96QF7
Germ cell nuclear acidic protein
DEG_SPOP_SBC_1
25:29
VQSSS
SPOP
0.9667
More...
Q9H2G4
Testis-specific Y-encoded-like protein 2
DEG_SPOP_SBC_1
135:139
VQSSS
SPOP
0.7915
More...
Q9NWH9
SAFB-like transcription modulator
DEG_SPOP_SBC_1
785:789
VQSSS
SPOP
0.9787
More...
Q9NYQ7
Cadherin EGF LAG seven-pass G-type receptor 3
DEG_SPOP_SBC_1
3261:3265
VQSSS
SPOP
0.715
More...
Q9UKI8
Serine/threonine-protein kinase tousled-like 1
DEG_SPOP_SBC_1
3:7
VQSSS
SPOP
0.6227
More...
Q9Y613
FH1/FH2 domain-containing protein 1
DEG_SPOP_SBC_1
1074:1078
VQSSS
SPOP
0.7081
More...
Q8WUF8
Cotranscriptional regulator FAM172A
DEG_SPOP_SBC_1
213:217
VQSSS
SPOP
0.9808
More...
Q2KHR3
Glutamine and serine-rich protein 1
DEG_SPOP_SBC_1
519:523
VQSSS
SPOP
0.9359
More...
Q6ZS46
Putative uncharacterized protein FLJ45840
DEG_SPOP_SBC_1
16:20
VQSSS
SPOP
0.8662
More...