DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VQSSS
Uniprot ID:
P49792
Source protein:
E3 SUMO-protein ligase RanBP2
Source gene:
RANBP2
Class:
DEG_SPOP_SBC_1
Location:
926:930
E3 ligase:
SPOP
DEGRON score:
0.9967
ASA_SCORE:
78.4
COIL:
0.8564
CONS_SCORE:
0.3366
DSS_SCORE:
0.4883
HELIX:
0.0968
FCONS_SCORE:
0.8881
RIG_SCORE:
0.6833
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q936H
TCGA-D3-A2JP
SKCM
TCGA
VQSSS
DEG_SPOP_SBC_1
0.1667
p.Q936H
DO47407
SKCM
ICGC
VQSSS
DEG_SPOP_SBC_1
0.1667
p.P918L
DO233281
GACA
ICGC
VQSSS
DEG_SPOP_SBC_1
0.1111
p.P918L
SIDM00429
B-Lymphoblastic Leukemia
GDSC
VQSSS
DEG_SPOP_SBC_1
0.1111
p.P918L
ACH-000938
Leukemia
CCLE
VQSSS
DEG_SPOP_SBC_1
0.1111
p.P918L
NALM-6
haematopoietic_and_lymphoid_tissue
COSMIC
VQSSS
DEG_SPOP_SBC_1
0.1111
p.T923R
DO228523
PRAD
ICGC
VQSSS
DEG_SPOP_SBC_1
0.6944
p.P924L
SIDM00217
Colorectal Carcinoma
GDSC
VQSSS
DEG_SPOP_SBC_1
0.2778
p.P924L
ACH-000999
Colon/Colorectal Cancer
CCLE
VQSSS
DEG_SPOP_SBC_1
0.2778
p.P924L
SNU-1040
large_intestine
COSMIC
VQSSS
DEG_SPOP_SBC_1
0.2778
p.F934L
SIDM01780
B-Cell Non-Hodgkin's Lymphoma
GDSC
VQSSS
DEG_SPOP_SBC_1
0.2222
p.F934L
ACH-000388
Lymphoma
CCLE
VQSSS
DEG_SPOP_SBC_1
0.2222
p.V926A
ACH-000993
Endometrial/Uterine Cancer
CCLE
VQSSS
DEG_SPOP_SBC_1
0.5825
Drug responses associated with RANBP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VQSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14917
Protocadherin-17
DEG_SPOP_SBC_1
873:877
VQSSS
SPOP
0.8664
More...
P49792
E3 SUMO-protein ligase RanBP2
DEG_SPOP_SBC_1
926:930
VQSSS
SPOP
0.9967
More...
Q6ZW76
Ankyrin repeat and SAM domain-containing protein 3
DEG_SPOP_SBC_1
348:352
VQSSS
SPOP
0.9789
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
759:763
VQSSS
SPOP
0.9855
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
1045:1049
VQSSS
SPOP
0.9519
More...
Q96QF7
Germ cell nuclear acidic protein
DEG_SPOP_SBC_1
25:29
VQSSS
SPOP
0.9667
More...
Q9H2G4
Testis-specific Y-encoded-like protein 2
DEG_SPOP_SBC_1
135:139
VQSSS
SPOP
0.7915
More...
Q9NWH9
SAFB-like transcription modulator
DEG_SPOP_SBC_1
785:789
VQSSS
SPOP
0.9787
More...
Q9NYQ7
Cadherin EGF LAG seven-pass G-type receptor 3
DEG_SPOP_SBC_1
3261:3265
VQSSS
SPOP
0.715
More...
Q9UKI8
Serine/threonine-protein kinase tousled-like 1
DEG_SPOP_SBC_1
3:7
VQSSS
SPOP
0.6227
More...
Q9Y613
FH1/FH2 domain-containing protein 1
DEG_SPOP_SBC_1
1074:1078
VQSSS
SPOP
0.7081
More...
Q8WUF8
Cotranscriptional regulator FAM172A
DEG_SPOP_SBC_1
213:217
VQSSS
SPOP
0.9808
More...
Q2KHR3
Glutamine and serine-rich protein 1
DEG_SPOP_SBC_1
519:523
VQSSS
SPOP
0.9359
More...
Q6ZS46
Putative uncharacterized protein FLJ45840
DEG_SPOP_SBC_1
16:20
VQSSS
SPOP
0.8662
More...