DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VVSSS
Uniprot ID:
P12035
Source protein:
Keratin, type II cytoskeletal 3
Source gene:
KRT3
Class:
DEG_SPOP_SBC_1
Location:
525:529
E3 ligase:
SPOP
DEGRON score:
0.6552
ASA_SCORE:
62.76
COIL:
0.5132
CONS_SCORE:
0.7388
DSS_SCORE:
0.3326
HELIX:
0.0108
FCONS_SCORE:
0.9916
RIG_SCORE:
0.7378
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T531N
TCGA-19-4068
GBM
TCGA
VVSSS
DEG_SPOP_SBC_1
0.2778
p.T531N
DO12028
GBM
ICGC
VVSSS
DEG_SPOP_SBC_1
0.2778
p.A520V
TCGA-A8-A09A
BRCA
TCGA
VVSSS
DEG_SPOP_SBC_1
0.1944
p.A520V
TCGA-BR-8372
STAD
TCGA
VVSSS
DEG_SPOP_SBC_1
0.1944
p.A520V
DO2955
BRCA
ICGC
VVSSS
DEG_SPOP_SBC_1
0.1944
p.A520V
DO47873
STAD
ICGC
VVSSS
DEG_SPOP_SBC_1
0.1944
p.Y538C
TCGA-J2-8194
LUAD
TCGA
VVSSS
DEG_SPOP_SBC_1
0.0833
p.Y538C
DO23971
LUAD
ICGC
VVSSS
DEG_SPOP_SBC_1
0.0833
p.V525A
DO45299
LIRI
ICGC
VVSSS
DEG_SPOP_SBC_1
0.5825
p.G539R
DO222384
MELA
ICGC
VVSSS
DEG_SPOP_SBC_1
0.0556
p.P518L
ACH-000123
Ovarian Cancer
CCLE
VVSSS
DEG_SPOP_SBC_1
0.1389
Drug responses associated with KRT3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P12035
Keratin, type II cytoskeletal 3
DEG_SPOP_SBC_1
525:529
VVSSS
SPOP
0.6552
More...
P41180
Extracellular calcium-sensing receptor
DEG_SPOP_SBC_1
1055:1059
VVSSS
SPOP
0.8121
More...
Q14525
Keratin, type I cuticular Ha3-II
DEG_SPOP_SBC_1
258:262
VVSSS
SPOP
0.5895
More...
Q5UIP0
Telomere-associated protein RIF1
DEG_SPOP_SBC_1
1196:1200
VVSSS
SPOP
0.8866
More...
Q8NDX5
Polyhomeotic-like protein 3
DEG_SPOP_SBC_1
197:201
VVSSS
SPOP
0.913
More...
Q96JH7
Deubiquitinating protein VCPIP1
DEG_SPOP_SBC_1
1143:1147
VVSSS
SPOP
0.9956
More...
Q9H2K2
Poly [ADP-ribose] polymerase tankyrase-2
DEG_SPOP_SBC_1
854:858
VVSSS
SPOP
0.9829
More...
Q9P243
Zinc finger protein ZFAT
DEG_SPOP_SBC_1
581:585
VVSSS
SPOP
0.9599
More...
Q9P2N6
KAT8 regulatory NSL complex subunit 3
DEG_SPOP_SBC_1
715:719
VVSSS
SPOP
0.9927
More...
O60279
Sushi domain-containing protein 5
DEG_SPOP_SBC_1
362:366
VVSSS
SPOP
0.9462
More...
Q96K58
Zinc finger protein 668
DEG_SPOP_SBC_1
402:406
VVSSS
SPOP
0.9427
More...
Q9BQN1
Protein FAM83C
DEG_SPOP_SBC_1
376:380
VVSSS
SPOP
0.9887
More...