DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VVSSS
Uniprot ID:
Q96JH7
Source protein:
Deubiquitinating protein VCPIP1
Source gene:
VCPIP1
Class:
DEG_SPOP_SBC_1
Location:
1143:1147
E3 ligase:
SPOP
DEGRON score:
0.9956
ASA_SCORE:
78.06
COIL:
0.6924
CONS_SCORE:
0.4014
DSS_SCORE:
0.6413
HELIX:
0.0596
FCONS_SCORE:
1.0506
RIG_SCORE:
0.6568
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q1154P
TCGA-77-7142
LUSC
TCGA
VVSSS
DEG_SPOP_SBC_1
0.1389
p.Q1154P
DO26462
LUSC
ICGC
VVSSS
DEG_SPOP_SBC_1
0.1389
p.R1139S
TCGA-A1-A0SO
BRCA
TCGA
VVSSS
DEG_SPOP_SBC_1
0.2222
p.R1139S
DO2020
BRCA
ICGC
VVSSS
DEG_SPOP_SBC_1
0.2222
p.S1146F
TCGA-AP-A059
UCEC
TCGA
VVSSS
DEG_SPOP_SBC_1
0.7982
p.S1146F
DO41361
UCEC
ICGC
VVSSS
DEG_SPOP_SBC_1
0.7982
p.S1146Y
TCGA-AX-A0J0
UCEC
TCGA
VVSSS
DEG_SPOP_SBC_1
0.712
p.S1146Y
DO41133
UCEC
ICGC
VVSSS
DEG_SPOP_SBC_1
0.712
p.L1157V
TCGA-AZ-4315
COAD
TCGA
VVSSS
DEG_SPOP_SBC_1
0.0556
p.L1157V
DO8842
COAD
ICGC
VVSSS
DEG_SPOP_SBC_1
0.0556
p.G1151R
DO47128
RECA
ICGC
VVSSS
DEG_SPOP_SBC_1
0.2222
p.Q1154H
SIDM01106
Melanoma
GDSC
VVSSS
DEG_SPOP_SBC_1
0.1389
p.Q1154H
ACH-000822
Skin Cancer
CCLE
VVSSS
DEG_SPOP_SBC_1
0.1389
p.Q1154H
SK-MEL-24
skin
COSMIC
VVSSS
DEG_SPOP_SBC_1
0.1389
p.R1139K
SIDM00070
B-Cell Non-Hodgkin's Lymphoma
GDSC
VVSSS
DEG_SPOP_SBC_1
0.2222
p.R1139K
CRO-AP3
NS
COSMIC
VVSSS
DEG_SPOP_SBC_1
0.2222
Drug responses associated with VCPIP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P12035
Keratin, type II cytoskeletal 3
DEG_SPOP_SBC_1
525:529
VVSSS
SPOP
0.6552
More...
P41180
Extracellular calcium-sensing receptor
DEG_SPOP_SBC_1
1055:1059
VVSSS
SPOP
0.8121
More...
Q14525
Keratin, type I cuticular Ha3-II
DEG_SPOP_SBC_1
258:262
VVSSS
SPOP
0.5895
More...
Q5UIP0
Telomere-associated protein RIF1
DEG_SPOP_SBC_1
1196:1200
VVSSS
SPOP
0.8866
More...
Q8NDX5
Polyhomeotic-like protein 3
DEG_SPOP_SBC_1
197:201
VVSSS
SPOP
0.913
More...
Q96JH7
Deubiquitinating protein VCPIP1
DEG_SPOP_SBC_1
1143:1147
VVSSS
SPOP
0.9956
More...
Q9H2K2
Poly [ADP-ribose] polymerase tankyrase-2
DEG_SPOP_SBC_1
854:858
VVSSS
SPOP
0.9829
More...
Q9P243
Zinc finger protein ZFAT
DEG_SPOP_SBC_1
581:585
VVSSS
SPOP
0.9599
More...
Q9P2N6
KAT8 regulatory NSL complex subunit 3
DEG_SPOP_SBC_1
715:719
VVSSS
SPOP
0.9927
More...
O60279
Sushi domain-containing protein 5
DEG_SPOP_SBC_1
362:366
VVSSS
SPOP
0.9462
More...
Q96K58
Zinc finger protein 668
DEG_SPOP_SBC_1
402:406
VVSSS
SPOP
0.9427
More...
Q9BQN1
Protein FAM83C
DEG_SPOP_SBC_1
376:380
VVSSS
SPOP
0.9887
More...