DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VVSSS
Uniprot ID:
Q5UIP0
Source protein:
Telomere-associated protein RIF1
Source gene:
RIF1
Class:
DEG_SPOP_SBC_1
Location:
1196:1200
E3 ligase:
SPOP
DEGRON score:
0.8866
ASA_SCORE:
91.06
COIL:
0.868
CONS_SCORE:
0.3578
DSS_SCORE:
0.395
HELIX:
0.0598
FCONS_SCORE:
1.1604
RIG_SCORE:
0.6968
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1200R
TCGA-19-5956
GBM
TCGA
VVSSS
DEG_SPOP_SBC_1
0.8538
p.S1200R
DO13863
GBM
ICGC
VVSSS
DEG_SPOP_SBC_1
0.8538
p.S1189F
TCGA-23-1116
OV
TCGA
VVSSS
DEG_SPOP_SBC_1
0.5833
p.S1189F
DO30050
OV
ICGC
VVSSS
DEG_SPOP_SBC_1
0.5833
p.S1194Y
TCGA-A4-7288
KIRP
TCGA
VVSSS
DEG_SPOP_SBC_1
0.7222
p.S1194Y
TCGA-DF-A2KU
UCEC
TCGA
VVSSS
DEG_SPOP_SBC_1
0.7222
p.S1194Y
DO20925
KIRP
ICGC
VVSSS
DEG_SPOP_SBC_1
0.7222
p.S1194Y
DO223286
UCEC
ICGC
VVSSS
DEG_SPOP_SBC_1
0.7222
p.V1196I
TCGA-A6-2686
COAD
TCGA
VVSSS
DEG_SPOP_SBC_1
0.7076
p.V1196I
DO7828
COAD
ICGC
VVSSS
DEG_SPOP_SBC_1
0.7076
p.N1193H
TCGA-AZ-4315
COAD
TCGA
VVSSS
DEG_SPOP_SBC_1
0.25
p.N1193H
DO8842
COAD
ICGC
VVSSS
DEG_SPOP_SBC_1
0.25
p.F1195S
DO223474
CLLE
ICGC
VVSSS
DEG_SPOP_SBC_1
0.3056
p.S1189P
ACH-000937
Leukemia
CCLE
VVSSS
DEG_SPOP_SBC_1
0.5833
p.S1189P
PF-382
haematopoietic_and_lymphoid_tissue
COSMIC
VVSSS
DEG_SPOP_SBC_1
0.5833
Drug responses associated with RIF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P12035
Keratin, type II cytoskeletal 3
DEG_SPOP_SBC_1
525:529
VVSSS
SPOP
0.6552
More...
P41180
Extracellular calcium-sensing receptor
DEG_SPOP_SBC_1
1055:1059
VVSSS
SPOP
0.8121
More...
Q14525
Keratin, type I cuticular Ha3-II
DEG_SPOP_SBC_1
258:262
VVSSS
SPOP
0.5895
More...
Q5UIP0
Telomere-associated protein RIF1
DEG_SPOP_SBC_1
1196:1200
VVSSS
SPOP
0.8866
More...
Q8NDX5
Polyhomeotic-like protein 3
DEG_SPOP_SBC_1
197:201
VVSSS
SPOP
0.913
More...
Q96JH7
Deubiquitinating protein VCPIP1
DEG_SPOP_SBC_1
1143:1147
VVSSS
SPOP
0.9956
More...
Q9H2K2
Poly [ADP-ribose] polymerase tankyrase-2
DEG_SPOP_SBC_1
854:858
VVSSS
SPOP
0.9829
More...
Q9P243
Zinc finger protein ZFAT
DEG_SPOP_SBC_1
581:585
VVSSS
SPOP
0.9599
More...
Q9P2N6
KAT8 regulatory NSL complex subunit 3
DEG_SPOP_SBC_1
715:719
VVSSS
SPOP
0.9927
More...
O60279
Sushi domain-containing protein 5
DEG_SPOP_SBC_1
362:366
VVSSS
SPOP
0.9462
More...
Q96K58
Zinc finger protein 668
DEG_SPOP_SBC_1
402:406
VVSSS
SPOP
0.9427
More...
Q9BQN1
Protein FAM83C
DEG_SPOP_SBC_1
376:380
VVSSS
SPOP
0.9887
More...