DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VVSSS
Uniprot ID:
Q8NDX5
Source protein:
Polyhomeotic-like protein 3
Source gene:
PHC3
Class:
DEG_SPOP_SBC_1
Location:
197:201
E3 ligase:
SPOP
DEGRON score:
0.913
ASA_SCORE:
88.88
COIL:
0.9572
CONS_SCORE:
0.4526
DSS_SCORE:
0.2854
HELIX:
0.0146
FCONS_SCORE:
0.956
RIG_SCORE:
0.7016
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L187V
TCGA-90-7964
LUSC
TCGA
VVSSS
DEG_SPOP_SBC_1
0.0556
p.L187V
DO27046
LUSC
ICGC
VVSSS
DEG_SPOP_SBC_1
0.0556
p.A202V
TCGA-B5-A11E
UCEC
TCGA
VVSSS
DEG_SPOP_SBC_1
0.3056
p.A202V
DO41644
UCEC
ICGC
VVSSS
DEG_SPOP_SBC_1
0.3056
p.P196L
TCGA-E6-A1LZ
UCEC
TCGA
VVSSS
DEG_SPOP_SBC_1
0.3056
p.P196L
DO41398
UCEC
ICGC
VVSSS
DEG_SPOP_SBC_1
0.3056
p.L192M
DO228986
LICA
ICGC
VVSSS
DEG_SPOP_SBC_1
0.1944
p.S211L
DO232761
PBCA
ICGC
VVSSS
DEG_SPOP_SBC_1
0.0556
p.R188Q
SIDM00683
Prostate Carcinoma
GDSC
VVSSS
DEG_SPOP_SBC_1
0.0833
p.R188Q
ACH-000977
lymph_node
CCLE
VVSSS
DEG_SPOP_SBC_1
0.0833
p.R188Q
ACH-001369
Ovarian Cancer
CCLE
VVSSS
DEG_SPOP_SBC_1
0.0833
p.R188Q
LNCaP-Clone-FGC
prostate
COSMIC
VVSSS
DEG_SPOP_SBC_1
0.0833
p.Q198E
JHH-1
liver
COSMIC
VVSSS
DEG_SPOP_SBC_1
0.6744
p.Q200H
LAN-6
autonomic_ganglia
COSMIC
VVSSS
DEG_SPOP_SBC_1
0.7582
Drug responses associated with PHC3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P12035
Keratin, type II cytoskeletal 3
DEG_SPOP_SBC_1
525:529
VVSSS
SPOP
0.6552
More...
P41180
Extracellular calcium-sensing receptor
DEG_SPOP_SBC_1
1055:1059
VVSSS
SPOP
0.8121
More...
Q14525
Keratin, type I cuticular Ha3-II
DEG_SPOP_SBC_1
258:262
VVSSS
SPOP
0.5895
More...
Q5UIP0
Telomere-associated protein RIF1
DEG_SPOP_SBC_1
1196:1200
VVSSS
SPOP
0.8866
More...
Q8NDX5
Polyhomeotic-like protein 3
DEG_SPOP_SBC_1
197:201
VVSSS
SPOP
0.913
More...
Q96JH7
Deubiquitinating protein VCPIP1
DEG_SPOP_SBC_1
1143:1147
VVSSS
SPOP
0.9956
More...
Q9H2K2
Poly [ADP-ribose] polymerase tankyrase-2
DEG_SPOP_SBC_1
854:858
VVSSS
SPOP
0.9829
More...
Q9P243
Zinc finger protein ZFAT
DEG_SPOP_SBC_1
581:585
VVSSS
SPOP
0.9599
More...
Q9P2N6
KAT8 regulatory NSL complex subunit 3
DEG_SPOP_SBC_1
715:719
VVSSS
SPOP
0.9927
More...
O60279
Sushi domain-containing protein 5
DEG_SPOP_SBC_1
362:366
VVSSS
SPOP
0.9462
More...
Q96K58
Zinc finger protein 668
DEG_SPOP_SBC_1
402:406
VVSSS
SPOP
0.9427
More...
Q9BQN1
Protein FAM83C
DEG_SPOP_SBC_1
376:380
VVSSS
SPOP
0.9887
More...