DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
AGSTS
Uniprot ID:
Q9NW13
Source protein:
RNA-binding protein 28
Source gene:
RBM28
Class:
DEG_SPOP_SBC_1
Location:
642:646
E3 ligase:
SPOP
DEGRON score:
0.9698
ASA_SCORE:
66.1
COIL:
0.8022
CONS_SCORE:
0.2516
DSS_SCORE:
0.6607
HELIX:
0.1626
FCONS_SCORE:
0.9705
RIG_SCORE:
0.5892
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A642V
TCGA-A5-A0G2
UCEC
TCGA
AGSTS
DEG_SPOP_SBC_1
0.5825
p.A642V
TCGA-AX-A0J1
UCEC
TCGA
AGSTS
DEG_SPOP_SBC_1
0.5825
p.A642V
DO41235
UCEC
ICGC
AGSTS
DEG_SPOP_SBC_1
0.5825
p.A642V
DO41199
UCEC
ICGC
AGSTS
DEG_SPOP_SBC_1
0.5825
p.A642V
SIDM00980
Gastric Carcinoma
GDSC
AGSTS
DEG_SPOP_SBC_1
0.5825
p.A642V
ACH-000948
Gastric Cancer
CCLE
AGSTS
DEG_SPOP_SBC_1
0.5825
p.A642V
23132-87
stomach
COSMIC
AGSTS
DEG_SPOP_SBC_1
0.5825
p.P636L
TCGA-OR-A5J1
ACC
TCGA
AGSTS
DEG_SPOP_SBC_1
0.1667
p.S644C
TCGA-S5-A6DX
BLCA
TCGA
AGSTS
DEG_SPOP_SBC_1
0.8652
p.S644C
DO51903
BLCA
ICGC
AGSTS
DEG_SPOP_SBC_1
0.8652
p.P635L
DO222662
MELA
ICGC
AGSTS
DEG_SPOP_SBC_1
0.1389
p.W647R
SIDM00573
Glioblastoma
GDSC
AGSTS
DEG_SPOP_SBC_1
0.3056
p.W647R
ACH-001606
Brain Cancer
CCLE
AGSTS
DEG_SPOP_SBC_1
0.3056
p.W647R
no-11
central_nervous_system
COSMIC
AGSTS
DEG_SPOP_SBC_1
0.3056
p.K633R
SIDM01113
Other Sarcomas
GDSC
AGSTS
DEG_SPOP_SBC_1
0.1944
p.K633R
ACH-000939
Sarcoma
CCLE
AGSTS
DEG_SPOP_SBC_1
0.1944
p.K633R
SK-UT-1
soft_tissue
COSMIC
AGSTS
DEG_SPOP_SBC_1
0.1944
p.R640T
ACH-000910
Breast Cancer
CCLE
AGSTS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with RBM28 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AGSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00567
Nucleolar protein 56
DEG_SPOP_SBC_1
526:530
AGSTS
SPOP
0.9464
More...
O15027
Protein transport protein Sec16A
DEG_SPOP_SBC_1
959:963
AGSTS
SPOP
0.9989
More...
O76080
AN1-type zinc finger protein 5
DEG_SPOP_SBC_1
80:84
AGSTS
SPOP
0.9883
More...
P03372
Estrogen receptor
DEG_SPOP_SBC_1
571:575
AGSTS
SPOP
0.9845
More...
P15923
Transcription factor E2-alpha
DEG_SPOP_SBC_1
453:457
AGSTS
SPOP
0.9279
More...
Q13164
Mitogen-activated protein kinase 7
DEG_SPOP_SBC_1
621:625
AGSTS
SPOP
0.9979
More...
Q14186
Transcription factor Dp-1
DEG_SPOP_SBC_1
350:354
AGSTS
SPOP
0.9899
More...
Q70CQ4
Ubiquitin carboxyl-terminal hydrolase 31
DEG_SPOP_SBC_1
778:782
AGSTS
SPOP
0.7948
More...
Q96JN0
Ligand-dependent corepressor
DEG_SPOP_SBC_1
93:97
AGSTS
SPOP
0.9806
More...
Q99570
Phosphoinositide 3-kinase regulatory subunit 4
DEG_SPOP_SBC_1
1280:1284
AGSTS
SPOP
0.8593
More...
Q9BXF6
Rab11 family-interacting protein 5
DEG_SPOP_SBC_1
38:42
AGSTS
SPOP
0.7413
More...
Q9NQV8
PR domain zinc finger protein 8
DEG_SPOP_SBC_1
469:473
AGSTS
SPOP
0.9917
More...
Q9NW13
RNA-binding protein 28
DEG_SPOP_SBC_1
642:646
AGSTS
SPOP
0.9698
More...
Q9Y466
Nuclear receptor subfamily 2 group E member 1
DEG_SPOP_SBC_1
5:9
AGSTS
SPOP
0.7921
More...
Q9Y5Q3
Transcription factor MafB
DEG_SPOP_SBC_1
309:313
AGSTS
SPOP
0.9235
More...
Q86XD8
AN1-type zinc finger protein 4
DEG_SPOP_SBC_1
574:578
AGSTS
SPOP
0.9676
More...
Q8IYL3
UPF0688 protein C1orf174
DEG_SPOP_SBC_1
33:37
AGSTS
SPOP
0.9615
More...
Q86X59
Putative uncharacterized protein LINC02875
DEG_SPOP_SBC_1
166:170
AGSTS
SPOP
0.9773
More...