DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PATTS
Uniprot ID:
P37198
Source protein:
Nuclear pore glycoprotein p62
Source gene:
NUP62
Class:
DEG_SPOP_SBC_1
Location:
151:155
E3 ligase:
SPOP
DEGRON score:
0.9788
ASA_SCORE:
71.36
COIL:
0.8586
CONS_SCORE:
0.4582
DSS_SCORE:
0.4544
HELIX:
0.0376
FCONS_SCORE:
0.9725
RIG_SCORE:
0.7158
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T165M
TCGA-B5-A3FA
UCEC
TCGA
PATTS
DEG_SPOP_SBC_1
0.0556
p.T165M
DO52402
UCEC
ICGC
PATTS
DEG_SPOP_SBC_1
0.0556
p.T165M
SIDM00773
Non-Cancerous
GDSC
PATTS
DEG_SPOP_SBC_1
0.0556
p.T165M
SIDM00774
Breast Carcinoma
GDSC
PATTS
DEG_SPOP_SBC_1
0.0556
p.F142S
TCGA-D1-A17Q
UCEC
TCGA
PATTS
DEG_SPOP_SBC_1
0.0833
p.F142S
DO41903
UCEC
ICGC
PATTS
DEG_SPOP_SBC_1
0.0833
p.G143D
DO233259
GACA
ICGC
PATTS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with NUP62 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PATTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00562
Membrane-associated phosphatidylinositol transfer protein 1
DEG_SPOP_SBC_1
652:656
PATTS
SPOP
0.8499
More...
P08651
Nuclear factor 1 C-type
DEG_SPOP_SBC_1
460:464
PATTS
SPOP
0.9973
More...
P18146
Early growth response protein 1
DEG_SPOP_SBC_1
461:465
PATTS
SPOP
0.9422
More...
P34810
Macrosialin
DEG_SPOP_SBC_1
111:115
PATTS
SPOP
0.9679
More...
P37198
Nuclear pore glycoprotein p62
DEG_SPOP_SBC_1
151:155
PATTS
SPOP
0.9788
More...
Q00535
Cyclin-dependent kinase 5
DEG_SPOP_SBC_1
243:247
PATTS
SPOP
0.9123
More...
Q12815
Tastin
DEG_SPOP_SBC_1
667:671
PATTS
SPOP
0.6469
More...
Q13585
Melatonin-related receptor
DEG_SPOP_SBC_1
523:527
PATTS
SPOP
0.9934
More...
Q2UY09
Collagen alpha-1
DEG_SPOP_SBC_1
1045:1049
PATTS
SPOP
0.9604
More...
Q68D85
Natural cytotoxicity triggering receptor 3 ligand 1
DEG_SPOP_SBC_1
433:437
PATTS
SPOP
0.9972
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7103:7107
PATTS
SPOP
0.9088
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7978:7982
PATTS
SPOP
0.8819
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
8273:8277
PATTS
SPOP
0.9418
More...
Q96KQ7
Histone-lysine N-methyltransferase EHMT2
DEG_SPOP_SBC_1
169:173
PATTS
SPOP
0.9946
More...
Q99816
Tumor susceptibility gene 101 protein
DEG_SPOP_SBC_1
197:201
PATTS
SPOP
0.9804
More...
Q9BVL2
Nucleoporin p58/p45
DEG_SPOP_SBC_1
98:102
PATTS
SPOP
0.8588
More...
Q9Y6R0
Numb-like protein
DEG_SPOP_SBC_1
266:270
PATTS
SPOP
0.9987
More...
Q5HYC2
Uncharacterized protein KIAA2026
DEG_SPOP_SBC_1
1751:1755
PATTS
SPOP
0.9429
More...