DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PATTS
Uniprot ID:
Q2UY09
Source protein:
Collagen alpha-1
Source gene:
COL28A1
Class:
DEG_SPOP_SBC_1
Location:
1045:1049
E3 ligase:
SPOP
DEGRON score:
0.9604
ASA_SCORE:
76.62
COIL:
0.9072
CONS_SCORE:
0.3244
DSS_SCORE:
0.7296
HELIX:
0.0386
FCONS_SCORE:
0.9919
RIG_SCORE:
0.6498
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.W1040L
TCGA-BF-A1PZ
SKCM
TCGA
PATTS
DEG_SPOP_SBC_1
0.1944
p.W1040L
DO50279
SKCM
ICGC
PATTS
DEG_SPOP_SBC_1
0.1944
p.T1048P
TCGA-CN-4727
HNSC
TCGA
PATTS
DEG_SPOP_SBC_1
0.7031
p.T1048P
DO14258
HNSC
ICGC
PATTS
DEG_SPOP_SBC_1
0.7031
p.A1035S
DO220554
KICH
ICGC
PATTS
DEG_SPOP_SBC_1
0.0556
p.A1046D
DO228974
LICA
ICGC
PATTS
DEG_SPOP_SBC_1
0.6682
p.T1053N
DO229026
LICA
ICGC
PATTS
DEG_SPOP_SBC_1
0.2222
p.D1043V
SIDM00550
Esophageal Squamous Cell Carcinoma
GDSC
PATTS
DEG_SPOP_SBC_1
0.2778
p.D1043V
ACH-002264
Esophageal Cancer
CCLE
PATTS
DEG_SPOP_SBC_1
0.2778
p.D1043V
KYSE-50
oesophagus
COSMIC
PATTS
DEG_SPOP_SBC_1
0.2778
p.D1043N
SIDM00550
Esophageal Squamous Cell Carcinoma
GDSC
PATTS
DEG_SPOP_SBC_1
0.2778
p.D1043N
ACH-002264
Esophageal Cancer
CCLE
PATTS
DEG_SPOP_SBC_1
0.2778
p.D1043N
KYSE-50
oesophagus
COSMIC
PATTS
DEG_SPOP_SBC_1
0.2778
p.T1039K
SIDM01409
Bladder Carcinoma
GDSC
PATTS
DEG_SPOP_SBC_1
0.1667
p.T1039K
ACH-000834
Bladder Cancer
CCLE
PATTS
DEG_SPOP_SBC_1
0.1667
Drug responses associated with COL28A1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PATTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00562
Membrane-associated phosphatidylinositol transfer protein 1
DEG_SPOP_SBC_1
652:656
PATTS
SPOP
0.8499
More...
P08651
Nuclear factor 1 C-type
DEG_SPOP_SBC_1
460:464
PATTS
SPOP
0.9973
More...
P18146
Early growth response protein 1
DEG_SPOP_SBC_1
461:465
PATTS
SPOP
0.9422
More...
P34810
Macrosialin
DEG_SPOP_SBC_1
111:115
PATTS
SPOP
0.9679
More...
P37198
Nuclear pore glycoprotein p62
DEG_SPOP_SBC_1
151:155
PATTS
SPOP
0.9788
More...
Q00535
Cyclin-dependent kinase 5
DEG_SPOP_SBC_1
243:247
PATTS
SPOP
0.9123
More...
Q12815
Tastin
DEG_SPOP_SBC_1
667:671
PATTS
SPOP
0.6469
More...
Q13585
Melatonin-related receptor
DEG_SPOP_SBC_1
523:527
PATTS
SPOP
0.9934
More...
Q2UY09
Collagen alpha-1
DEG_SPOP_SBC_1
1045:1049
PATTS
SPOP
0.9604
More...
Q68D85
Natural cytotoxicity triggering receptor 3 ligand 1
DEG_SPOP_SBC_1
433:437
PATTS
SPOP
0.9972
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7103:7107
PATTS
SPOP
0.9088
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7978:7982
PATTS
SPOP
0.8819
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
8273:8277
PATTS
SPOP
0.9418
More...
Q96KQ7
Histone-lysine N-methyltransferase EHMT2
DEG_SPOP_SBC_1
169:173
PATTS
SPOP
0.9946
More...
Q99816
Tumor susceptibility gene 101 protein
DEG_SPOP_SBC_1
197:201
PATTS
SPOP
0.9804
More...
Q9BVL2
Nucleoporin p58/p45
DEG_SPOP_SBC_1
98:102
PATTS
SPOP
0.8588
More...
Q9Y6R0
Numb-like protein
DEG_SPOP_SBC_1
266:270
PATTS
SPOP
0.9987
More...
Q5HYC2
Uncharacterized protein KIAA2026
DEG_SPOP_SBC_1
1751:1755
PATTS
SPOP
0.9429
More...