DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PCSSS
Uniprot ID:
Q5T749
Source protein:
Keratinocyte proline-rich protein
Source gene:
KPRP
Class:
DEG_SPOP_SBC_1
Location:
277:281
E3 ligase:
SPOP
DEGRON score:
0.9032
ASA_SCORE:
84.18
COIL:
0.9564
CONS_SCORE:
0.7291
DSS_SCORE:
0.4018
HELIX:
0.03
FCONS_SCORE:
0.8649
RIG_SCORE:
0.6615
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E276D
TCGA-43-5668
LUSC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.3056
p.E276D
DO26608
LUSC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.3056
p.R267C
TCGA-44-8117
LUAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.0556
p.R267C
DO24028
LUAD
ICGC
PCSSS
DEG_SPOP_SBC_1
0.0556
p.L283M
TCGA-91-6829
LUAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.2778
p.L283M
DO23564
LUAD
ICGC
PCSSS
DEG_SPOP_SBC_1
0.2778
p.G290C
TCGA-A5-A0G2
UCEC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.0833
p.G290C
DO41235
UCEC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.0833
p.R267H
TCGA-A5-A0GP
UCEC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.0556
p.R267H
DO41109
UCEC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.0556
p.R267H
SIDM00660
Colorectal Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.0556
p.R267H
ACH-000985
Colon/Colorectal Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.0556
p.R267H
ACH-001609
Brain Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.0556
p.R267H
LS-411N
large_intestine
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.0556
p.P271Q
TCGA-A7-A4SE
BRCA
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1667
p.P271Q
DO44141
BRCA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1667
p.P271Q
SIDM00143
Small Cell Lung Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1667
p.P271Q
ACH-000803
Lung Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.1667
p.P271Q
COLO-668
lung
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.1667
p.R267G
TCGA-AC-A8OP
BRCA
TCGA
PCSSS
DEG_SPOP_SBC_1
0.0556
p.R267G
DO50032
BRCA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.0556
p.R274C
TCGA-D1-A16E
UCEC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.25
p.R274C
TCGA-N5-A4RO
UCS
TCGA
PCSSS
DEG_SPOP_SBC_1
0.25
p.R274C
DO41002
UCEC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.25
p.C269R
DO228203
LICA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1111
p.C269F
DO229028
LICA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1111
p.R274L
DO229025
LICA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.25
p.P271L
SIDM00251
Gastric Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1667
p.P271L
SIDM00024
Non-Cancerous
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1667
p.P271L
TGBC11TKB
stomach
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.1667
p.S279Y
SIDM00138
Non-Small Cell Lung Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.712
p.S279Y
ACH-000900
Lung Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.712
p.S279Y
NCI-H23
lung
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.712
Drug responses associated with KPRP mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PCSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75385
Serine/threonine-protein kinase ULK1
DEG_SPOP_SBC_1
407:411
PCSSS
SPOP
0.9876
More...
Q03167
Transforming growth factor beta receptor type 3
DEG_SPOP_SBC_1
844:848
PCSSS
SPOP
0.998
More...
Q5T749
Keratinocyte proline-rich protein
DEG_SPOP_SBC_1
277:281
PCSSS
SPOP
0.9032
More...
Q6W2J9
BCL-6 corepressor
DEG_SPOP_SBC_1
1435:1439
PCSSS
SPOP
0.935
More...
Q8IYX3
Coiled-coil domain-containing protein 116
DEG_SPOP_SBC_1
403:407
PCSSS
SPOP
0.772
More...
Q8NBR6
Ubiquitin carboxyl-terminal hydrolase MINDY-2
DEG_SPOP_SBC_1
78:82
PCSSS
SPOP
0.992
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
617:621
PCSSS
SPOP
0.8344
More...
Q99941
Cyclic AMP-dependent transcription factor ATF-6 beta
DEG_SPOP_SBC_1
94:98
PCSSS
SPOP
0.9963
More...
Q9NWZ8
Gem-associated protein 8
DEG_SPOP_SBC_1
87:91
PCSSS
SPOP
0.9101
More...
Q8TC76
Protein FAM110B
DEG_SPOP_SBC_1
216:220
PCSSS
SPOP
0.9592
More...
Q9BU23
Lipase maturation factor 2
DEG_SPOP_SBC_1
695:699
PCSSS
SPOP
0.9238
More...
Q9Y5P3
Retinoic acid-induced protein 2
DEG_SPOP_SBC_1
145:149
PCSSS
SPOP
0.7764
More...
Q7Z736
Pleckstrin homology domain-containing family H member 3
DEG_SPOP_SBC_1
755:759
PCSSS
SPOP
0.8988
More...