DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PCSSS
Uniprot ID:
Q9Y5P3
Source protein:
Retinoic acid-induced protein 2
Source gene:
RAI2
Class:
DEG_SPOP_SBC_1
Location:
145:149
E3 ligase:
SPOP
DEGRON score:
0.7764
ASA_SCORE:
64.4
COIL:
0.8578
CONS_SCORE:
0.6201
DSS_SCORE:
0.4034
HELIX:
0.0886
FCONS_SCORE:
0.9747
RIG_SCORE:
0.6539
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S149R
TCGA-51-6867
LUSC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.7427
p.S149R
DO26477
LUSC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.7427
p.S147Y
TCGA-55-8506
LUAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.712
p.S147Y
DO45390
LUAD
ICGC
PCSSS
DEG_SPOP_SBC_1
0.712
p.P141T
TCGA-86-8073
LUAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.2222
p.P141T
DO23624
LUAD
ICGC
PCSSS
DEG_SPOP_SBC_1
0.2222
p.L155F
TCGA-DI-A1BU
UCEC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1667
p.T150N
TCGA-E9-A1RF
BRCA
TCGA
PCSSS
DEG_SPOP_SBC_1
0.3056
p.T150N
DO2665
BRCA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.3056
p.E143K
TCGA-EE-A3AA
SKCM
TCGA
PCSSS
DEG_SPOP_SBC_1
0.2778
p.E143K
DO222632
MELA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.2778
p.E143K
DO37571
SKCM
ICGC
PCSSS
DEG_SPOP_SBC_1
0.2778
p.S147F
TCGA-ER-A19S
SKCM
TCGA
PCSSS
DEG_SPOP_SBC_1
0.7982
p.S147F
TCGA-ER-A42L
SKCM
TCGA
PCSSS
DEG_SPOP_SBC_1
0.7982
p.S147T
TCGA-FR-A726
SKCM
TCGA
PCSSS
DEG_SPOP_SBC_1
0.6005
p.S147T
DO48665
SKCM
ICGC
PCSSS
DEG_SPOP_SBC_1
0.6005
p.A144S
DO50341
ESAD
ICGC
PCSSS
DEG_SPOP_SBC_1
0.3056
p.G149W
DO26430
LUSC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.7825
p.G158E
DO220881
MELA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.0833
p.E135K
DO46436
OV
ICGC
PCSSS
DEG_SPOP_SBC_1
0.0556
p.G149R
DO38875
STAD
ICGC
PCSSS
DEG_SPOP_SBC_1
0.7568
p.N135D
SIDM00874
Breast Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.0556
p.N135D
ACH-000223
Breast Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.0556
p.P137H
SIDM01146
Gastric Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1111
p.P137H
ACH-000932
Gastric Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.1111
p.P137H
NCI-SNU-1
stomach
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.1111
p.P145S
SIDM00901
Endometrial Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.6752
p.P145S
ACH-000940
Endometrial/Uterine Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.6752
p.P145S
AN3-CA
endometrium
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.6752
p.P141Q
ACH-000467
Colon/Colorectal Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.2222
p.P141Q
HCC-56
large_intestine
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.2222
p.Q139H
LNZTA3WT4
central_nervous_system
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.1667
Drug responses associated with RAI2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PCSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75385
Serine/threonine-protein kinase ULK1
DEG_SPOP_SBC_1
407:411
PCSSS
SPOP
0.9876
More...
Q03167
Transforming growth factor beta receptor type 3
DEG_SPOP_SBC_1
844:848
PCSSS
SPOP
0.998
More...
Q5T749
Keratinocyte proline-rich protein
DEG_SPOP_SBC_1
277:281
PCSSS
SPOP
0.9032
More...
Q6W2J9
BCL-6 corepressor
DEG_SPOP_SBC_1
1435:1439
PCSSS
SPOP
0.935
More...
Q8IYX3
Coiled-coil domain-containing protein 116
DEG_SPOP_SBC_1
403:407
PCSSS
SPOP
0.772
More...
Q8NBR6
Ubiquitin carboxyl-terminal hydrolase MINDY-2
DEG_SPOP_SBC_1
78:82
PCSSS
SPOP
0.992
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
617:621
PCSSS
SPOP
0.8344
More...
Q99941
Cyclic AMP-dependent transcription factor ATF-6 beta
DEG_SPOP_SBC_1
94:98
PCSSS
SPOP
0.9963
More...
Q9NWZ8
Gem-associated protein 8
DEG_SPOP_SBC_1
87:91
PCSSS
SPOP
0.9101
More...
Q8TC76
Protein FAM110B
DEG_SPOP_SBC_1
216:220
PCSSS
SPOP
0.9592
More...
Q9BU23
Lipase maturation factor 2
DEG_SPOP_SBC_1
695:699
PCSSS
SPOP
0.9238
More...
Q9Y5P3
Retinoic acid-induced protein 2
DEG_SPOP_SBC_1
145:149
PCSSS
SPOP
0.7764
More...
Q7Z736
Pleckstrin homology domain-containing family H member 3
DEG_SPOP_SBC_1
755:759
PCSSS
SPOP
0.8988
More...