DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PCSSS
Uniprot ID:
Q8NBR6
Source protein:
Ubiquitin carboxyl-terminal hydrolase MINDY-2
Source gene:
MINDY2
Class:
DEG_SPOP_SBC_1
Location:
78:82
E3 ligase:
SPOP
DEGRON score:
0.992
ASA_SCORE:
73.46
COIL:
0.8948
CONS_SCORE:
0.1865
DSS_SCORE:
0.6265
HELIX:
0.069
FCONS_SCORE:
0.9728
RIG_SCORE:
0.5762
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P78L
SIDM00422
Hodgkin's Lymphoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.7582
p.P78L
SUP-HD1
haematopoietic_and_lymphoid_tissue
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.7582
p.P73R
SIDM00529
Breast Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1944
p.P73R
SIDM00793
Burkitt's Lymphoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1944
p.G71A
SIDM00485
Oral Cavity Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1389
p.A70S
SIDM01387
Small Cell Lung Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with MINDY2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PCSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75385
Serine/threonine-protein kinase ULK1
DEG_SPOP_SBC_1
407:411
PCSSS
SPOP
0.9876
More...
Q03167
Transforming growth factor beta receptor type 3
DEG_SPOP_SBC_1
844:848
PCSSS
SPOP
0.998
More...
Q5T749
Keratinocyte proline-rich protein
DEG_SPOP_SBC_1
277:281
PCSSS
SPOP
0.9032
More...
Q6W2J9
BCL-6 corepressor
DEG_SPOP_SBC_1
1435:1439
PCSSS
SPOP
0.935
More...
Q8IYX3
Coiled-coil domain-containing protein 116
DEG_SPOP_SBC_1
403:407
PCSSS
SPOP
0.772
More...
Q8NBR6
Ubiquitin carboxyl-terminal hydrolase MINDY-2
DEG_SPOP_SBC_1
78:82
PCSSS
SPOP
0.992
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
617:621
PCSSS
SPOP
0.8344
More...
Q99941
Cyclic AMP-dependent transcription factor ATF-6 beta
DEG_SPOP_SBC_1
94:98
PCSSS
SPOP
0.9963
More...
Q9NWZ8
Gem-associated protein 8
DEG_SPOP_SBC_1
87:91
PCSSS
SPOP
0.9101
More...
Q8TC76
Protein FAM110B
DEG_SPOP_SBC_1
216:220
PCSSS
SPOP
0.9592
More...
Q9BU23
Lipase maturation factor 2
DEG_SPOP_SBC_1
695:699
PCSSS
SPOP
0.9238
More...
Q9Y5P3
Retinoic acid-induced protein 2
DEG_SPOP_SBC_1
145:149
PCSSS
SPOP
0.7764
More...
Q7Z736
Pleckstrin homology domain-containing family H member 3
DEG_SPOP_SBC_1
755:759
PCSSS
SPOP
0.8988
More...