DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PCSSS
Uniprot ID:
Q8WZ75
Source protein:
Roundabout homolog 4
Source gene:
ROBO4
Class:
DEG_SPOP_SBC_1
Location:
617:621
E3 ligase:
SPOP
DEGRON score:
0.8344
ASA_SCORE:
66.02
COIL:
0.8316
CONS_SCORE:
0.668
DSS_SCORE:
0.4751
HELIX:
0.1018
FCONS_SCORE:
0.991
RIG_SCORE:
0.6224
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L624F
TCGA-39-5016
LUSC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.25
p.L624F
DO26701
LUSC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.25
p.R627H
TCGA-49-4514
LUAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1667
p.R627H
TCGA-B5-A11H
UCEC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1667
p.R627H
DO23818
LUAD
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1667
p.R627H
DO42825
UCEC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1667
p.R627L
TCGA-49-AAR9
LUAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1667
p.R627L
DO218921
LUAD
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1667
p.P609L
TCGA-B5-A1MX
UCEC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1111
p.P609L
DO41999
UCEC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1111
p.G629R
TCGA-GN-A266
SKCM
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1111
p.G629R
DO37432
SKCM
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1111
p.R631H
DO9698
COAD
ICGC
PCSSS
DEG_SPOP_SBC_1
0.0556
p.D622E
DO233177
GACA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.3056
p.D622E
DO231204
LUSC
ICGC
PCSSS
DEG_SPOP_SBC_1
0.3056
p.S610R
DO228974
LICA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1389
p.S626R
DO229029
LICA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1944
p.Q610K
DO229022
LICA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1389
p.S621F
DO222843
MELA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.7982
p.A628D
DO28893
OV
ICGC
PCSSS
DEG_SPOP_SBC_1
0.1389
p.D622V
DO46897
RECA
ICGC
PCSSS
DEG_SPOP_SBC_1
0.3056
p.Q613L
SIDM01134
Small Cell Lung Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.2222
p.Q613L
ACH-000292
Lung Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.2222
p.Q613L
NCI-H841
lung
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.2222
p.G629A
SIDM00703
Non-Small Cell Lung Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1111
p.G629A
ACH-000929
Lung Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.1111
p.G629A
NCI-H2110
lung
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.1111
p.C618Y
SIDM00749
Non-Small Cell Lung Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.5976
p.C618Y
ACH-000916
Lung Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.5976
p.C618Y
NCI-H1573
lung
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.5976
p.S619F
SIDM00011
Melanoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.7982
p.S619F
ACH-000477
Skin Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.7982
p.G629E
SIDM00497
Colorectal Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1111
p.P607A
EW-18
bone
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.0556
Drug responses associated with ROBO4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PCSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75385
Serine/threonine-protein kinase ULK1
DEG_SPOP_SBC_1
407:411
PCSSS
SPOP
0.9876
More...
Q03167
Transforming growth factor beta receptor type 3
DEG_SPOP_SBC_1
844:848
PCSSS
SPOP
0.998
More...
Q5T749
Keratinocyte proline-rich protein
DEG_SPOP_SBC_1
277:281
PCSSS
SPOP
0.9032
More...
Q6W2J9
BCL-6 corepressor
DEG_SPOP_SBC_1
1435:1439
PCSSS
SPOP
0.935
More...
Q8IYX3
Coiled-coil domain-containing protein 116
DEG_SPOP_SBC_1
403:407
PCSSS
SPOP
0.772
More...
Q8NBR6
Ubiquitin carboxyl-terminal hydrolase MINDY-2
DEG_SPOP_SBC_1
78:82
PCSSS
SPOP
0.992
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
617:621
PCSSS
SPOP
0.8344
More...
Q99941
Cyclic AMP-dependent transcription factor ATF-6 beta
DEG_SPOP_SBC_1
94:98
PCSSS
SPOP
0.9963
More...
Q9NWZ8
Gem-associated protein 8
DEG_SPOP_SBC_1
87:91
PCSSS
SPOP
0.9101
More...
Q8TC76
Protein FAM110B
DEG_SPOP_SBC_1
216:220
PCSSS
SPOP
0.9592
More...
Q9BU23
Lipase maturation factor 2
DEG_SPOP_SBC_1
695:699
PCSSS
SPOP
0.9238
More...
Q9Y5P3
Retinoic acid-induced protein 2
DEG_SPOP_SBC_1
145:149
PCSSS
SPOP
0.7764
More...
Q7Z736
Pleckstrin homology domain-containing family H member 3
DEG_SPOP_SBC_1
755:759
PCSSS
SPOP
0.8988
More...