DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PCSSS
Uniprot ID:
Q9BU23
Source protein:
Lipase maturation factor 2
Source gene:
LMF2
Class:
DEG_SPOP_SBC_1
Location:
695:699
E3 ligase:
SPOP
DEGRON score:
0.9238
ASA_SCORE:
87.78
COIL:
0.9214
CONS_SCORE:
0.2098
DSS_SCORE:
0.7564
HELIX:
0.0714
FCONS_SCORE:
0.9061
RIG_SCORE:
0.5703
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R704Q
TCGA-2J-AAB6
PAAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1944
p.R704Q
TCGA-AD-5900
COAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1944
p.R704Q
SIDM00144
Non-Small Cell Lung Carcinoma
GDSC
PCSSS
DEG_SPOP_SBC_1
0.1944
p.R704Q
ACH-000463
Lung Cancer
CCLE
PCSSS
DEG_SPOP_SBC_1
0.1944
p.R704Q
NCI-H460
lung
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.1944
p.S700L
TCGA-AZ-4315
COAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.75
p.S700L
TCGA-EB-A6QY
SKCM
TCGA
PCSSS
DEG_SPOP_SBC_1
0.75
p.S700L
TCGA-EO-A3AV
UCEC
TCGA
PCSSS
DEG_SPOP_SBC_1
0.75
p.R704W
TCGA-CD-5801
STAD
TCGA
PCSSS
DEG_SPOP_SBC_1
0.1944
p.A691T
SIDM00951
T-Lymphoblastic Leukemia
GDSC
PCSSS
DEG_SPOP_SBC_1
0.2222
p.A691T
ACH-002222
Leukemia
CCLE
PCSSS
DEG_SPOP_SBC_1
0.2222
p.A691T
CTV-1
haematopoietic_and_lymphoid_tissue
COSMIC
PCSSS
DEG_SPOP_SBC_1
0.2222
Drug responses associated with LMF2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PCSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75385
Serine/threonine-protein kinase ULK1
DEG_SPOP_SBC_1
407:411
PCSSS
SPOP
0.9876
More...
Q03167
Transforming growth factor beta receptor type 3
DEG_SPOP_SBC_1
844:848
PCSSS
SPOP
0.998
More...
Q5T749
Keratinocyte proline-rich protein
DEG_SPOP_SBC_1
277:281
PCSSS
SPOP
0.9032
More...
Q6W2J9
BCL-6 corepressor
DEG_SPOP_SBC_1
1435:1439
PCSSS
SPOP
0.935
More...
Q8IYX3
Coiled-coil domain-containing protein 116
DEG_SPOP_SBC_1
403:407
PCSSS
SPOP
0.772
More...
Q8NBR6
Ubiquitin carboxyl-terminal hydrolase MINDY-2
DEG_SPOP_SBC_1
78:82
PCSSS
SPOP
0.992
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
617:621
PCSSS
SPOP
0.8344
More...
Q99941
Cyclic AMP-dependent transcription factor ATF-6 beta
DEG_SPOP_SBC_1
94:98
PCSSS
SPOP
0.9963
More...
Q9NWZ8
Gem-associated protein 8
DEG_SPOP_SBC_1
87:91
PCSSS
SPOP
0.9101
More...
Q8TC76
Protein FAM110B
DEG_SPOP_SBC_1
216:220
PCSSS
SPOP
0.9592
More...
Q9BU23
Lipase maturation factor 2
DEG_SPOP_SBC_1
695:699
PCSSS
SPOP
0.9238
More...
Q9Y5P3
Retinoic acid-induced protein 2
DEG_SPOP_SBC_1
145:149
PCSSS
SPOP
0.7764
More...
Q7Z736
Pleckstrin homology domain-containing family H member 3
DEG_SPOP_SBC_1
755:759
PCSSS
SPOP
0.8988
More...