DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CPH
CGC
Degron:
PVTTT
Uniprot ID:
P12111
Source protein:
Collagen alpha-3
Source gene:
COL6A3
Class:
DEG_SPOP_SBC_1
Location:
2876:2880
E3 ligase:
SPOP
DEGRON score:
0.9639
ASA_SCORE:
84.8
COIL:
0.7708
CONS_SCORE:
0.313
DSS_SCORE:
0.5621
HELIX:
0.0146
FCONS_SCORE:
0.8716
RIG_SCORE:
0.7261
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T2880M
TCGA-A2-A0YM
BRCA
TCGA
PVTTT
DEG_SPOP_SBC_1
0.7423
p.T2879M
TCGA-AF-2687
READ
TCGA
PVTTT
DEG_SPOP_SBC_1
0.7423
p.T2879M
TCGA-EI-6882
READ
TCGA
PVTTT
DEG_SPOP_SBC_1
0.7423
p.T2879M
SIDM00422
Hodgkin's Lymphoma
GDSC
PVTTT
DEG_SPOP_SBC_1
0.7423
p.P2876L
TCGA-IB-7651
PAAD
TCGA
PVTTT
DEG_SPOP_SBC_1
0.7582
p.P2876L
TCGA-UF-A7JO
HNSC
TCGA
PVTTT
DEG_SPOP_SBC_1
0.7582
p.T2887S
TCGA-WE-A8K1
SKCM
TCGA
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO222990
BTCA
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO229013
COCA
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO229016
COCA
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO229003
COCA
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO229005
COCA
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO234203
ESAD
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO230659
LAML
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO230937
LUSC
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO230950
LUSC
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO230990
LUSC
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2869I
DO52346
LUSC
ICGC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.S2879Y
DO42312
UCEC
ICGC
PVTTT
DEG_SPOP_SBC_1
0.712
p.S2879Y
DO41644
UCEC
ICGC
PVTTT
DEG_SPOP_SBC_1
0.712
p.K2877N
DO52412
UCEC
ICGC
PVTTT
DEG_SPOP_SBC_1
0.6918
p.K2877N
DO41799
UCEC
ICGC
PVTTT
DEG_SPOP_SBC_1
0.6918
p.T2878A
SIDM00723
Non-Small Cell Lung Carcinoma
GDSC
PVTTT
DEG_SPOP_SBC_1
0.7139
p.T2878A
ACH-000186
Lung Cancer
CCLE
PVTTT
DEG_SPOP_SBC_1
0.7139
p.T2878A
NCI-H2444
lung
COSMIC
PVTTT
DEG_SPOP_SBC_1
0.7139
p.T2887I
SIDM00806
Osteosarcoma
GDSC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2887I
SIDM00085
Glioma
GDSC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2887I
ACH-000613
Bone Cancer
CCLE
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2887I
ACH-001001
Bone Cancer
CCLE
PVTTT
DEG_SPOP_SBC_1
0.1389
p.T2887I
HOS
bone
COSMIC
PVTTT
DEG_SPOP_SBC_1
0.1389
p.K2888M
SIDM00989
Bladder Carcinoma
GDSC
PVTTT
DEG_SPOP_SBC_1
0.2222
p.K2888M
ACH-000802
Bladder Cancer
CCLE
PVTTT
DEG_SPOP_SBC_1
0.2222
p.K2888M
BFTC-905
urinary_tract
COSMIC
PVTTT
DEG_SPOP_SBC_1
0.2222
p.K2888N
ACH-000973
Bladder Cancer
CCLE
PVTTT
DEG_SPOP_SBC_1
0.2222
Drug responses associated with COL6A3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NKB5
Pecanex-like protein 2
DEG_SPOP_SBC_1
2000:2004
PVTTT
SPOP
0.9571
More...
O43283
Mitogen-activated protein kinase kinase kinase 13
DEG_SPOP_SBC_1
63:67
PVTTT
SPOP
0.9958
More...
P12111
Collagen alpha-3
DEG_SPOP_SBC_1
2870:2874
PVTTT
SPOP
0.5381
More...
P12111
Collagen alpha-3
DEG_SPOP_SBC_1
2876:2880
PVTTT
SPOP
0.9639
More...
P12111
Collagen alpha-3
DEG_SPOP_SBC_1
2882:2886
PVTTT
SPOP
0.8697
More...
P12111
Collagen alpha-3
DEG_SPOP_SBC_1
2889:2893
PVTTT
SPOP
0.991
More...
P18583
Protein SON
DEG_SPOP_SBC_1
507:511
PVTTT
SPOP
0.6512
More...
P27540
Aryl hydrocarbon receptor nuclear translocator
DEG_SPOP_SBC_1
530:534
PVTTT
SPOP
0.9876
More...
P36956
Sterol regulatory element-binding protein 1
DEG_SPOP_SBC_1
224:228
PVTTT
SPOP
0.9066
More...
P49848
Transcription initiation factor TFIID subunit 6
DEG_SPOP_SBC_1
570:574
PVTTT
SPOP
0.5016
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3488:3492
PVTTT
SPOP
0.525
More...
Q14896
Myosin-binding protein C, cardiac-type
DEG_SPOP_SBC_1
955:959
PVTTT
SPOP
0.8503
More...
Q8WZ42
Titin
DEG_SPOP_SBC_1
33135:33139
PVTTT
SPOP
0.9908
More...
Q96D42
Hepatitis A virus cellular receptor 1
DEG_SPOP_SBC_1
203:207
PVTTT
SPOP
0.9927
More...
Q9Y6V0
Protein piccolo
DEG_SPOP_SBC_1
665:669
PVTTT
SPOP
0.9936
More...
Q7Z2K8
G protein-regulated inducer of neurite outgrowth 1
DEG_SPOP_SBC_1
616:620
PVTTT
SPOP
0.9985
More...