DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
APTST
Uniprot ID:
Q8NEZ2
Source protein:
Vacuolar protein sorting-associated protein 37A
Source gene:
VPS37A
Class:
DEG_SPOP_SBC_1
Location:
131:135
E3 ligase:
SPOP
DEGRON score:
0.7089
ASA_SCORE:
63.92
COIL:
0.8608
CONS_SCORE:
0.306
DSS_SCORE:
0.1761
HELIX:
0.0736
FCONS_SCORE:
0.7082
RIG_SCORE:
0.773
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A136V
TCGA-AJ-A8CV
UCEC
TCGA
APTST
DEG_SPOP_SBC_1
0.3056
p.P138L
TCGA-WE-A8ZX
SKCM
TCGA
APTST
DEG_SPOP_SBC_1
0.25
p.P131T
DO234278
ESAD
ICGC
APTST
DEG_SPOP_SBC_1
0.7031
p.P137T
DO22837
LIHC
ICGC
APTST
DEG_SPOP_SBC_1
0.2778
p.P135S
DO46657
PAAD
ICGC
APTST
DEG_SPOP_SBC_1
0.6752
p.E140Q
DO51465
PACA
ICGC
APTST
DEG_SPOP_SBC_1
0.1944
p.G129C
DO37431
SKCM
ICGC
APTST
DEG_SPOP_SBC_1
0.2778
p.Q128K
DO47569
SKCM
ICGC
APTST
DEG_SPOP_SBC_1
0.25
p.S123F
DO52402
UCEC
ICGC
APTST
DEG_SPOP_SBC_1
0.1111
p.S127Y
DO42673
UCEC
ICGC
APTST
DEG_SPOP_SBC_1
0.2222
p.P144T
SIDM00789
Colorectal Carcinoma
GDSC
APTST
DEG_SPOP_SBC_1
0.0833
p.P144T
HCT-15
large_intestine
COSMIC
APTST
DEG_SPOP_SBC_1
0.0833
p.Y141C
SIDM00252
Biliary Tract Carcinoma
GDSC
APTST
DEG_SPOP_SBC_1
0.1667
p.Y141C
ACH-001861
Gallbladder Cancer
CCLE
APTST
DEG_SPOP_SBC_1
0.1667
p.Y141C
TGBC1TKB
biliary_tract
COSMIC
APTST
DEG_SPOP_SBC_1
0.1667
p.N143H
ACH-000976
Bile Duct Cancer
CCLE
APTST
DEG_SPOP_SBC_1
0.1111
Drug responses associated with VPS37A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of APTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15068
Guanine nucleotide exchange factor DBS
DEG_SPOP_SBC_1
970:974
APTST
SPOP
0.8568
More...
O15446
DNA-directed RNA polymerase I subunit RPA34
DEG_SPOP_SBC_1
417:421
APTST
SPOP
0.8174
More...
O94993
Transcription factor SOX-30
DEG_SPOP_SBC_1
725:729
APTST
SPOP
0.9793
More...
P16220
Cyclic AMP-responsive element-binding protein 1
DEG_SPOP_SBC_1
243:247
APTST
SPOP
0.9982
More...
P51532
Transcription activator BRG1
DEG_SPOP_SBC_1
294:298
APTST
SPOP
0.9108
More...
P54727
UV excision repair protein RAD23 homolog B
DEG_SPOP_SBC_1
118:122
APTST
SPOP
0.9799
More...
P56270
Myc-associated zinc finger protein
DEG_SPOP_SBC_1
166:170
APTST
SPOP
0.7258
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3763:3767
APTST
SPOP
0.9554
More...
Q15303
Receptor tyrosine-protein kinase erbB-4
DEG_SPOP_SBC_1
1083:1087
APTST
SPOP
0.9967
More...
Q5VT06
Centrosome-associated protein 350
DEG_SPOP_SBC_1
51:55
APTST
SPOP
0.925
More...
Q70E73
Ras-associated and pleckstrin homology domains-containing protein 1
DEG_SPOP_SBC_1
787:791
APTST
SPOP
0.9144
More...
Q8IV63
Inactive serine/threonine-protein kinase VRK3
DEG_SPOP_SBC_1
184:188
APTST
SPOP
0.8522
More...
Q8IW00
V-set and transmembrane domain-containing protein 4 [Cleaved into: Peptide Lv]
DEG_SPOP_SBC_1
304:308
APTST
SPOP
0.9964
More...
Q8NEZ2
Vacuolar protein sorting-associated protein 37A
DEG_SPOP_SBC_1
131:135
APTST
SPOP
0.7089
More...
Q8WUU4
Zinc finger protein 296
DEG_SPOP_SBC_1
312:316
APTST
SPOP
0.9874
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12979:12983
APTST
SPOP
0.9309
More...
Q96F05
Uncharacterized protein C11orf24
DEG_SPOP_SBC_1
168:172
APTST
SPOP
0.9958
More...
Q9C000
NACHT, LRR and PYD domains-containing protein 1
DEG_SPOP_SBC_1
176:180
APTST
SPOP
0.8015
More...
Q9H2X6
Homeodomain-interacting protein kinase 2
DEG_SPOP_SBC_1
903:907
APTST
SPOP
0.9701
More...
Q9UL54
Serine/threonine-protein kinase TAO2
DEG_SPOP_SBC_1
446:450
APTST
SPOP
0.9351
More...
Q5SXM8
DNL-type zinc finger protein
DEG_SPOP_SBC_1
154:158
APTST
SPOP
0.6422
More...
Q9H0E3
Histone deacetylase complex subunit SAP130
DEG_SPOP_SBC_1
403:407
APTST
SPOP
0.9592
More...
A6NMZ2
Sentan
DEG_SPOP_SBC_1
24:28
APTST
SPOP
0.9862
More...