DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPIY
Uniprot ID:
Q9BRJ2
Source protein:
39S ribosomal protein L45, mitochondrial
Source gene:
MRPL45
Class:
ITCH
Location:
43:46
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.9042
ASA_SCORE:
98.05
COIL:
0.946
CONS_SCORE:
0.3845
DSS_SCORE:
0.4269
HELIX:
0.04
FCONS_SCORE:
1.1242
RIG_SCORE:
0.7793
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P34S
DO225397
BRCA
ICGC
PPIY
ITCH
0.0833
p.K49E
DO222762
COCA
ICGC
PPIY
ITCH
0.6944
p.P44L
DO229453
SKCA
ICGC
PPIY
ITCH
0.7582
p.R40H
SIDM01588
Endometrial Carcinoma
GDSC
PPIY
ITCH
0.25
p.R40H
ACH-000993
Endometrial/Uterine Cancer
CCLE
PPIY
ITCH
0.25
p.P43L
ACH-000261
Lung Cancer
CCLE
PPIY
ITCH
0.7582
p.P43L
ACH-002122
Lung Cancer
CCLE
PPIY
ITCH
0.7582
p.K51T
ACH-000970
Colon/Colorectal Cancer
CCLE
PPIY
ITCH
0.3056
Drug responses associated with MRPL45 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPIY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14639
Actin-binding LIM protein 1
ITCH
525:528
PPIY
ITCH,NEDD4
0.9688
More...
O43281
Embryonal Fyn-associated substrate
ITCH
214:217
PPIY
ITCH,NEDD4
0.6414
More...
O94929
Actin-binding LIM protein 3
ITCH
444:447
PPIY
ITCH,NEDD4
0.9628
More...
Q08495
Dematin
ITCH
144:147
PPIY
ITCH,NEDD4
0.9997
More...
Q15303
Receptor tyrosine-protein kinase erbB-4
ITCH
1032:1035
PPIY
ITCH,NEDD4
0.9911
More...
Q5TC82
Roquin-1
ITCH
663:666
PPIY
ITCH,NEDD4
0.9994
More...
Q6H8Q1
Actin-binding LIM protein 2
ITCH
435:438
PPIY
ITCH,NEDD4
0.9984
More...
Q9NZR2
Low-density lipoprotein receptor-related protein 1B
ITCH
4538:4541
PPIY
ITCH,NEDD4
0.9665
More...
Q9Y2H6
Fibronectin type-III domain-containing protein 3A
ITCH
73:76
PPIY
ITCH,NEDD4
0.947
More...
Q6BDS2
UHRF1-binding protein 1
ITCH
1331:1334
PPIY
ITCH,NEDD4
0.9895
More...
Q9BRJ2
39S ribosomal protein L45, mitochondrial
ITCH
43:46
PPIY
ITCH,NEDD4
0.9042
More...
Q8IXT5
RNA-binding protein 12B
ITCH
516:519
PPIY
ITCH,NEDD4
0.9914
More...
A6NJJ6
UPF0575 protein C19orf67
ITCH
147:150
PPIY
ITCH,NEDD4
0.9135
More...
Q5VZQ5
Testis-expressed protein 36
ITCH
53:56
PPIY
ITCH,NEDD4
0.9983
More...