DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPIY
Uniprot ID:
Q9NZR2
Source protein:
Low-density lipoprotein receptor-related protein 1B
Source gene:
LRP1B
Class:
ITCH
Location:
4538:4541
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.9665
ASA_SCORE:
68.45
COIL:
0.7738
CONS_SCORE:
0.2064
DSS_SCORE:
0.3282
HELIX:
0.0663
FCONS_SCORE:
0.9532
RIG_SCORE:
0.7709
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I4540V
TCGA-05-4389
LUAD
TCGA
PPIY
ITCH
0.5965
p.I4540V
DO24307
LUAD
ICGC
PPIY
ITCH
0.5965
p.F4531L
TCGA-05-4430
LUAD
TCGA
PPIY
ITCH
0.1389
p.F4531L
DO23750
LUAD
ICGC
PPIY
ITCH
0.1389
p.A4537V
TCGA-06-5416
GBM
TCGA
PPIY
ITCH
0.3056
p.A4537V
TCGA-AP-A0LM
UCEC
TCGA
PPIY
ITCH
0.3056
p.A4537V
TCGA-BS-A0UV
UCEC
TCGA
PPIY
ITCH
0.3056
p.A4537V
TCGA-VQ-A8PB
STAD
TCGA
PPIY
ITCH
0.3056
p.A4537V
DO10880
GBM
ICGC
PPIY
ITCH
0.3056
p.A4537V
DO51766
STAD
ICGC
PPIY
ITCH
0.3056
p.A4537V
DO43306
UCEC
ICGC
PPIY
ITCH
0.3056
p.A4537V
DO42793
UCEC
ICGC
PPIY
ITCH
0.3056
p.L4533I
TCGA-44-8119
LUAD
TCGA
PPIY
ITCH
0.1944
p.L4533I
DO24399
LUAD
ICGC
PPIY
ITCH
0.1944
p.P4539H
TCGA-55-8621
LUAD
TCGA
PPIY
ITCH
0.7694
p.P4539H
DO25406
LUAD
ICGC
PPIY
ITCH
0.7694
p.I4540M
TCGA-58-8391
LUSC
TCGA
PPIY
ITCH
0.6507
p.I4540M
DO45440
LUSC
ICGC
PPIY
ITCH
0.6507
p.H4535N
TCGA-69-7974
LUAD
TCGA
PPIY
ITCH
0.25
p.H4535N
DO23850
LUAD
ICGC
PPIY
ITCH
0.25
p.S4544F
TCGA-D3-A2JE
SKCM
TCGA
PPIY
ITCH
0.25
p.S4544F
DO219476
SKCM
ICGC
PPIY
ITCH
0.25
p.G4548E
TCGA-EE-A3J8
SKCM
TCGA
PPIY
ITCH
0.1389
p.G4548E
DO47276
SKCM
ICGC
PPIY
ITCH
0.1389
p.Y4541H
TCGA-VQ-A8P2
STAD
TCGA
PPIY
ITCH
0.7229
p.Y4541H
DO51761
STAD
ICGC
PPIY
ITCH
0.7229
p.L4542I
DO230950
LUSC
ICGC
PPIY
ITCH
0.3056
p.L4542I
DO224638
LUSC
ICGC
PPIY
ITCH
0.3056
p.A4537E
SIDM00760
Small Cell Lung Carcinoma
GDSC
PPIY
ITCH
0.3056
p.A4537E
ACH-000729
Lung Cancer
CCLE
PPIY
ITCH
0.3056
p.A4537E
NCI-H1963
lung
COSMIC
PPIY
ITCH
0.3056
p.P4534T
ACH-000700
Lung Cancer
CCLE
PPIY
ITCH
0.2222
Drug responses associated with LRP1B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPIY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14639
Actin-binding LIM protein 1
ITCH
525:528
PPIY
ITCH,NEDD4
0.9688
More...
O43281
Embryonal Fyn-associated substrate
ITCH
214:217
PPIY
ITCH,NEDD4
0.6414
More...
O94929
Actin-binding LIM protein 3
ITCH
444:447
PPIY
ITCH,NEDD4
0.9628
More...
Q08495
Dematin
ITCH
144:147
PPIY
ITCH,NEDD4
0.9997
More...
Q15303
Receptor tyrosine-protein kinase erbB-4
ITCH
1032:1035
PPIY
ITCH,NEDD4
0.9911
More...
Q5TC82
Roquin-1
ITCH
663:666
PPIY
ITCH,NEDD4
0.9994
More...
Q6H8Q1
Actin-binding LIM protein 2
ITCH
435:438
PPIY
ITCH,NEDD4
0.9984
More...
Q9NZR2
Low-density lipoprotein receptor-related protein 1B
ITCH
4538:4541
PPIY
ITCH,NEDD4
0.9665
More...
Q9Y2H6
Fibronectin type-III domain-containing protein 3A
ITCH
73:76
PPIY
ITCH,NEDD4
0.947
More...
Q6BDS2
UHRF1-binding protein 1
ITCH
1331:1334
PPIY
ITCH,NEDD4
0.9895
More...
Q9BRJ2
39S ribosomal protein L45, mitochondrial
ITCH
43:46
PPIY
ITCH,NEDD4
0.9042
More...
Q8IXT5
RNA-binding protein 12B
ITCH
516:519
PPIY
ITCH,NEDD4
0.9914
More...
A6NJJ6
UPF0575 protein C19orf67
ITCH
147:150
PPIY
ITCH,NEDD4
0.9135
More...
Q5VZQ5
Testis-expressed protein 36
ITCH
53:56
PPIY
ITCH,NEDD4
0.9983
More...