DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VDSSS
Uniprot ID:
O43933
Source protein:
Peroxisome biogenesis factor 1
Source gene:
PEX1
Class:
DEG_SPOP_SBC_1
Location:
237:241
E3 ligase:
SPOP
DEGRON score:
0.8555
ASA_SCORE:
71.54
COIL:
0.7312
CONS_SCORE:
0.2069
DSS_SCORE:
0.4137
HELIX:
0.2318
FCONS_SCORE:
0.8755
RIG_SCORE:
0.7431
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E232K
TCGA-19-5956
GBM
TCGA
VDSSS
DEG_SPOP_SBC_1
0.1944
p.E232K
DO13863
GBM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.1944
p.G250E
TCGA-A2-A0YK
BRCA
TCGA
VDSSS
DEG_SPOP_SBC_1
0.0833
p.G250E
DO2836
BRCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.0833
p.I235S
TCGA-B5-A11N
UCEC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.2778
p.I235S
DO41458
UCEC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.2778
p.V242A
TCGA-DI-A1BU
UCEC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.3056
p.V242A
DO42023
UCEC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.3056
p.S239F
DO220877
MELA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.7982
p.S239F
DO220891
MELA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.7982
p.S239F
DO37404
SKCM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.7982
p.S228F
DO222875
MELA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.0833
Drug responses associated with PEX1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43933
Peroxisome biogenesis factor 1
DEG_SPOP_SBC_1
237:241
VDSSS
SPOP
0.8555
More...
O95487
Protein transport protein Sec24B
DEG_SPOP_SBC_1
390:394
VDSSS
SPOP
0.9656
More...
P42566
Epidermal growth factor receptor substrate 15
DEG_SPOP_SBC_1
603:607
VDSSS
SPOP
0.9971
More...
Q16829
Dual specificity protein phosphatase 7
DEG_SPOP_SBC_1
190:194
VDSSS
SPOP
0.7455
More...
Q52LW3
Rho GTPase-activating protein 29
DEG_SPOP_SBC_1
180:184
VDSSS
SPOP
0.5545
More...
Q5T011
KICSTOR complex protein SZT2
DEG_SPOP_SBC_1
2343:2347
VDSSS
SPOP
0.9669
More...
Q5VWN6
Protein TASOR 2
DEG_SPOP_SBC_1
1206:1210
VDSSS
SPOP
0.999
More...
Q6UX06
Olfactomedin-4
DEG_SPOP_SBC_1
40:44
VDSSS
SPOP
0.7065
More...
Q8N612
FHF complex subunit HOOK interacting protein 1B
DEG_SPOP_SBC_1
485:489
VDSSS
SPOP
0.9815
More...
Q8NA82
Probable E3 ubiquitin-protein ligase MARCHF10
DEG_SPOP_SBC_1
573:577
VDSSS
SPOP
0.9813
More...
Q9H4S2
GS homeobox 1
DEG_SPOP_SBC_1
137:141
VDSSS
SPOP
0.9033
More...
Q9NY59
Sphingomyelin phosphodiesterase 3
DEG_SPOP_SBC_1
234:238
VDSSS
SPOP
0.8987
More...
Q9P2D1
Chromodomain-helicase-DNA-binding protein 7
DEG_SPOP_SBC_1
139:143
VDSSS
SPOP
0.9816
More...
Q9Y6X4
Soluble lamin-associated protein of 75 kDa
DEG_SPOP_SBC_1
633:637
VDSSS
SPOP
0.9898
More...
O95873
Uncharacterized protein C6orf47
DEG_SPOP_SBC_1
32:36
VDSSS
SPOP
0.9921
More...
Q6DCA0
AMMECR1-like protein
DEG_SPOP_SBC_1
55:59
VDSSS
SPOP
0.9677
More...