DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VDSSS
Uniprot ID:
O95487
Source protein:
Protein transport protein Sec24B
Source gene:
SEC24B
Class:
DEG_SPOP_SBC_1
Location:
390:394
E3 ligase:
SPOP
DEGRON score:
0.9656
ASA_SCORE:
93.46
COIL:
0.948
CONS_SCORE:
0.2681
DSS_SCORE:
0.8557
HELIX:
0.0376
FCONS_SCORE:
1.064
RIG_SCORE:
0.5715
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E381Q
TCGA-A8-A08R
BRCA
TCGA
VDSSS
DEG_SPOP_SBC_1
0.0833
p.E381Q
DO1255
BRCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.0833
p.S392N
TCGA-B7-A5TI
STAD
TCGA
VDSSS
DEG_SPOP_SBC_1
0.7069
p.S392N
DO222328
STAD
ICGC
VDSSS
DEG_SPOP_SBC_1
0.7069
p.D385E
TCGA-CV-A6K1
HNSC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.1944
p.D385E
DO52078
HNSC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.1944
p.P398L
DO229502
SKCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.2222
p.D381Y
DO37444
SKCM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.0833
p.P396T
DO41831
UCEC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.2778
p.V386M
SIDM00845
Burkitt's Lymphoma
GDSC
VDSSS
DEG_SPOP_SBC_1
0.2222
p.V386M
ACH-001450
Lymphoma
CCLE
VDSSS
DEG_SPOP_SBC_1
0.2222
p.N394D
SIDM00901
Endometrial Carcinoma
GDSC
VDSSS
DEG_SPOP_SBC_1
0.6932
p.N394D
ACH-000940
Endometrial/Uterine Cancer
CCLE
VDSSS
DEG_SPOP_SBC_1
0.6932
p.N394D
AN3-CA
endometrium
COSMIC
VDSSS
DEG_SPOP_SBC_1
0.6932
p.P401L
ACH-000809
Esophageal Cancer
CCLE
VDSSS
DEG_SPOP_SBC_1
0.1389
p.P401L
KYSE-410
oesophagus
COSMIC
VDSSS
DEG_SPOP_SBC_1
0.1389
p.P403T
A704
kidney
COSMIC
VDSSS
DEG_SPOP_SBC_1
0.0833
p.P392A
KYSE-50
oesophagus
COSMIC
VDSSS
DEG_SPOP_SBC_1
0.7503
p.D393V
BEN
lung
COSMIC
VDSSS
DEG_SPOP_SBC_1
0.7785
p.S402F
LS-123
large_intestine
COSMIC
VDSSS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with SEC24B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43933
Peroxisome biogenesis factor 1
DEG_SPOP_SBC_1
237:241
VDSSS
SPOP
0.8555
More...
O95487
Protein transport protein Sec24B
DEG_SPOP_SBC_1
390:394
VDSSS
SPOP
0.9656
More...
P42566
Epidermal growth factor receptor substrate 15
DEG_SPOP_SBC_1
603:607
VDSSS
SPOP
0.9971
More...
Q16829
Dual specificity protein phosphatase 7
DEG_SPOP_SBC_1
190:194
VDSSS
SPOP
0.7455
More...
Q52LW3
Rho GTPase-activating protein 29
DEG_SPOP_SBC_1
180:184
VDSSS
SPOP
0.5545
More...
Q5T011
KICSTOR complex protein SZT2
DEG_SPOP_SBC_1
2343:2347
VDSSS
SPOP
0.9669
More...
Q5VWN6
Protein TASOR 2
DEG_SPOP_SBC_1
1206:1210
VDSSS
SPOP
0.999
More...
Q6UX06
Olfactomedin-4
DEG_SPOP_SBC_1
40:44
VDSSS
SPOP
0.7065
More...
Q8N612
FHF complex subunit HOOK interacting protein 1B
DEG_SPOP_SBC_1
485:489
VDSSS
SPOP
0.9815
More...
Q8NA82
Probable E3 ubiquitin-protein ligase MARCHF10
DEG_SPOP_SBC_1
573:577
VDSSS
SPOP
0.9813
More...
Q9H4S2
GS homeobox 1
DEG_SPOP_SBC_1
137:141
VDSSS
SPOP
0.9033
More...
Q9NY59
Sphingomyelin phosphodiesterase 3
DEG_SPOP_SBC_1
234:238
VDSSS
SPOP
0.8987
More...
Q9P2D1
Chromodomain-helicase-DNA-binding protein 7
DEG_SPOP_SBC_1
139:143
VDSSS
SPOP
0.9816
More...
Q9Y6X4
Soluble lamin-associated protein of 75 kDa
DEG_SPOP_SBC_1
633:637
VDSSS
SPOP
0.9898
More...
O95873
Uncharacterized protein C6orf47
DEG_SPOP_SBC_1
32:36
VDSSS
SPOP
0.9921
More...
Q6DCA0
AMMECR1-like protein
DEG_SPOP_SBC_1
55:59
VDSSS
SPOP
0.9677
More...