DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VDSSS
Uniprot ID:
Q52LW3
Source protein:
Rho GTPase-activating protein 29
Source gene:
ARHGAP29
Class:
DEG_SPOP_SBC_1
Location:
180:184
E3 ligase:
SPOP
DEGRON score:
0.5545
ASA_SCORE:
75.28
COIL:
0.8568
CONS_SCORE:
0.2616
DSS_SCORE:
0.4126
HELIX:
0.115
FCONS_SCORE:
0.8777
RIG_SCORE:
0.6723
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S171L
TCGA-AP-A0LM
UCEC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.5278
p.S171L
TCGA-BS-A0UF
UCEC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.5278
p.S171L
DO218884
SKCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.5278
p.S171L
DO43306
UCEC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.5278
p.S171L
DO41488
UCEC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.5278
p.S190F
TCGA-BF-AAP2
SKCM
TCGA
VDSSS
DEG_SPOP_SBC_1
0.6111
p.S190F
TCGA-DA-A1HV
SKCM
TCGA
VDSSS
DEG_SPOP_SBC_1
0.6111
p.S190F
TCGA-ER-A2NG
SKCM
TCGA
VDSSS
DEG_SPOP_SBC_1
0.6111
p.S190F
DO220881
MELA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.6111
p.S190F
DO222644
MELA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.6111
p.S190F
DO222749
MELA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.6111
p.S190F
DO37659
SKCM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.6111
p.S190F
DO47552
SKCM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.6111
p.S190F
DO219466
SKCM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.6111
p.G187E
TCGA-D3-A8GL
SKCM
TCGA
VDSSS
DEG_SPOP_SBC_1
0.25
p.G187E
DO50287
SKCM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.25
p.P191L
TCGA-DA-A1IC
SKCM
TCGA
VDSSS
DEG_SPOP_SBC_1
0.1389
p.P191L
DO37430
SKCM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.1389
p.N188K
TCGA-EO-A22R
UCEC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.2222
p.N188K
DO42713
UCEC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.2222
p.S182L
TCGA-FD-A6TB
BLCA
TCGA
VDSSS
DEG_SPOP_SBC_1
0.8778
p.S182L
DO51879
BLCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.8778
p.E185K
TCGA-FW-A3R5
SKCM
TCGA
VDSSS
DEG_SPOP_SBC_1
0.3056
p.E185K
DO37406
SKCM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.3056
p.E178K
TCGA-GF-A6C9
SKCM
TCGA
VDSSS
DEG_SPOP_SBC_1
0.2778
p.E178K
DO51254
SKCM
ICGC
VDSSS
DEG_SPOP_SBC_1
0.2778
p.E173K
TCGA-TN-A7HL
HNSC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.1389
p.E173K
DO219080
HNSC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.1389
p.F189L
DO52674
MALY
ICGC
VDSSS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with ARHGAP29 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43933
Peroxisome biogenesis factor 1
DEG_SPOP_SBC_1
237:241
VDSSS
SPOP
0.8555
More...
O95487
Protein transport protein Sec24B
DEG_SPOP_SBC_1
390:394
VDSSS
SPOP
0.9656
More...
P42566
Epidermal growth factor receptor substrate 15
DEG_SPOP_SBC_1
603:607
VDSSS
SPOP
0.9971
More...
Q16829
Dual specificity protein phosphatase 7
DEG_SPOP_SBC_1
190:194
VDSSS
SPOP
0.7455
More...
Q52LW3
Rho GTPase-activating protein 29
DEG_SPOP_SBC_1
180:184
VDSSS
SPOP
0.5545
More...
Q5T011
KICSTOR complex protein SZT2
DEG_SPOP_SBC_1
2343:2347
VDSSS
SPOP
0.9669
More...
Q5VWN6
Protein TASOR 2
DEG_SPOP_SBC_1
1206:1210
VDSSS
SPOP
0.999
More...
Q6UX06
Olfactomedin-4
DEG_SPOP_SBC_1
40:44
VDSSS
SPOP
0.7065
More...
Q8N612
FHF complex subunit HOOK interacting protein 1B
DEG_SPOP_SBC_1
485:489
VDSSS
SPOP
0.9815
More...
Q8NA82
Probable E3 ubiquitin-protein ligase MARCHF10
DEG_SPOP_SBC_1
573:577
VDSSS
SPOP
0.9813
More...
Q9H4S2
GS homeobox 1
DEG_SPOP_SBC_1
137:141
VDSSS
SPOP
0.9033
More...
Q9NY59
Sphingomyelin phosphodiesterase 3
DEG_SPOP_SBC_1
234:238
VDSSS
SPOP
0.8987
More...
Q9P2D1
Chromodomain-helicase-DNA-binding protein 7
DEG_SPOP_SBC_1
139:143
VDSSS
SPOP
0.9816
More...
Q9Y6X4
Soluble lamin-associated protein of 75 kDa
DEG_SPOP_SBC_1
633:637
VDSSS
SPOP
0.9898
More...
O95873
Uncharacterized protein C6orf47
DEG_SPOP_SBC_1
32:36
VDSSS
SPOP
0.9921
More...
Q6DCA0
AMMECR1-like protein
DEG_SPOP_SBC_1
55:59
VDSSS
SPOP
0.9677
More...