DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VDSSS
Uniprot ID:
O95873
Source protein:
Uncharacterized protein C6orf47
Source gene:
C6orf47
Class:
DEG_SPOP_SBC_1
Location:
32:36
E3 ligase:
SPOP
DEGRON score:
0.9921
ASA_SCORE:
76.78
COIL:
0.9044
CONS_SCORE:
0.8206
DSS_SCORE:
0.6586
HELIX:
0.0644
FCONS_SCORE:
1.0197
RIG_SCORE:
0.5538
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S36W
TCGA-AC-A5XS
BRCA
TCGA
VDSSS
DEG_SPOP_SBC_1
0.8985
p.S36W
DO50023
BRCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.8985
p.E37D
TCGA-AG-A002
READ
TCGA
VDSSS
DEG_SPOP_SBC_1
0.3056
p.S41C
TCGA-CJ-6030
KIRC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.6389
p.S41C
DO19058
KIRC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.6389
p.S41N
TCGA-EY-A1GU
UCEC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.6389
p.S41N
DO41518
UCEC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.6389
p.E37Q
TCGA-XF-AAMG
BLCA
TCGA
VDSSS
DEG_SPOP_SBC_1
0.3056
p.E37Q
DO219049
BLCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.3056
p.E37K
DO224732
BRCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.3056
p.R31W
DO233764
GACA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.3056
p.A46V
DO229211
THCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.0556
p.P29A
SIDM00455
Pancreatic Carcinoma
GDSC
VDSSS
DEG_SPOP_SBC_1
0.25
Drug responses associated with C6orf47 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43933
Peroxisome biogenesis factor 1
DEG_SPOP_SBC_1
237:241
VDSSS
SPOP
0.8555
More...
O95487
Protein transport protein Sec24B
DEG_SPOP_SBC_1
390:394
VDSSS
SPOP
0.9656
More...
P42566
Epidermal growth factor receptor substrate 15
DEG_SPOP_SBC_1
603:607
VDSSS
SPOP
0.9971
More...
Q16829
Dual specificity protein phosphatase 7
DEG_SPOP_SBC_1
190:194
VDSSS
SPOP
0.7455
More...
Q52LW3
Rho GTPase-activating protein 29
DEG_SPOP_SBC_1
180:184
VDSSS
SPOP
0.5545
More...
Q5T011
KICSTOR complex protein SZT2
DEG_SPOP_SBC_1
2343:2347
VDSSS
SPOP
0.9669
More...
Q5VWN6
Protein TASOR 2
DEG_SPOP_SBC_1
1206:1210
VDSSS
SPOP
0.999
More...
Q6UX06
Olfactomedin-4
DEG_SPOP_SBC_1
40:44
VDSSS
SPOP
0.7065
More...
Q8N612
FHF complex subunit HOOK interacting protein 1B
DEG_SPOP_SBC_1
485:489
VDSSS
SPOP
0.9815
More...
Q8NA82
Probable E3 ubiquitin-protein ligase MARCHF10
DEG_SPOP_SBC_1
573:577
VDSSS
SPOP
0.9813
More...
Q9H4S2
GS homeobox 1
DEG_SPOP_SBC_1
137:141
VDSSS
SPOP
0.9033
More...
Q9NY59
Sphingomyelin phosphodiesterase 3
DEG_SPOP_SBC_1
234:238
VDSSS
SPOP
0.8987
More...
Q9P2D1
Chromodomain-helicase-DNA-binding protein 7
DEG_SPOP_SBC_1
139:143
VDSSS
SPOP
0.9816
More...
Q9Y6X4
Soluble lamin-associated protein of 75 kDa
DEG_SPOP_SBC_1
633:637
VDSSS
SPOP
0.9898
More...
O95873
Uncharacterized protein C6orf47
DEG_SPOP_SBC_1
32:36
VDSSS
SPOP
0.9921
More...
Q6DCA0
AMMECR1-like protein
DEG_SPOP_SBC_1
55:59
VDSSS
SPOP
0.9677
More...