DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VDSSS
Uniprot ID:
Q9H4S2
Source protein:
GS homeobox 1
Source gene:
GSX1
Class:
DEG_SPOP_SBC_1
Location:
137:141
E3 ligase:
SPOP
DEGRON score:
0.9033
ASA_SCORE:
70.44
COIL:
0.862
CONS_SCORE:
0.3506
DSS_SCORE:
0.4623
HELIX:
0.068
FCONS_SCORE:
0.6519
RIG_SCORE:
0.6595
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S146N
TCGA-C5-A1M5
CESC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.1944
p.S146N
DO6250
CESC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.1944
p.S146N
DO50970
LICA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.1944
p.P145L
TCGA-D1-A2G0
UCEC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.2222
p.P145L
DO43049
UCEC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.2222
p.H133Y
TCGA-DK-A3WW
BLCA
TCGA
VDSSS
DEG_SPOP_SBC_1
0.2222
p.H133Y
DO481
BLCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.2222
p.R151C
TCGA-EA-A410
CESC
TCGA
VDSSS
DEG_SPOP_SBC_1
0.0556
p.R151C
DO49929
CESC
ICGC
VDSSS
DEG_SPOP_SBC_1
0.0556
p.R151C
DO233089
GACA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.0556
p.R151C
DO233898
GACA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.0556
p.S139N
DO222884
COCA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.7069
p.R151H
DO46673
PACA
ICGC
VDSSS
DEG_SPOP_SBC_1
0.0556
p.F132L
ACH-000982
Colon/Colorectal Cancer
CCLE
VDSSS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with GSX1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43933
Peroxisome biogenesis factor 1
DEG_SPOP_SBC_1
237:241
VDSSS
SPOP
0.8555
More...
O95487
Protein transport protein Sec24B
DEG_SPOP_SBC_1
390:394
VDSSS
SPOP
0.9656
More...
P42566
Epidermal growth factor receptor substrate 15
DEG_SPOP_SBC_1
603:607
VDSSS
SPOP
0.9971
More...
Q16829
Dual specificity protein phosphatase 7
DEG_SPOP_SBC_1
190:194
VDSSS
SPOP
0.7455
More...
Q52LW3
Rho GTPase-activating protein 29
DEG_SPOP_SBC_1
180:184
VDSSS
SPOP
0.5545
More...
Q5T011
KICSTOR complex protein SZT2
DEG_SPOP_SBC_1
2343:2347
VDSSS
SPOP
0.9669
More...
Q5VWN6
Protein TASOR 2
DEG_SPOP_SBC_1
1206:1210
VDSSS
SPOP
0.999
More...
Q6UX06
Olfactomedin-4
DEG_SPOP_SBC_1
40:44
VDSSS
SPOP
0.7065
More...
Q8N612
FHF complex subunit HOOK interacting protein 1B
DEG_SPOP_SBC_1
485:489
VDSSS
SPOP
0.9815
More...
Q8NA82
Probable E3 ubiquitin-protein ligase MARCHF10
DEG_SPOP_SBC_1
573:577
VDSSS
SPOP
0.9813
More...
Q9H4S2
GS homeobox 1
DEG_SPOP_SBC_1
137:141
VDSSS
SPOP
0.9033
More...
Q9NY59
Sphingomyelin phosphodiesterase 3
DEG_SPOP_SBC_1
234:238
VDSSS
SPOP
0.8987
More...
Q9P2D1
Chromodomain-helicase-DNA-binding protein 7
DEG_SPOP_SBC_1
139:143
VDSSS
SPOP
0.9816
More...
Q9Y6X4
Soluble lamin-associated protein of 75 kDa
DEG_SPOP_SBC_1
633:637
VDSSS
SPOP
0.9898
More...
O95873
Uncharacterized protein C6orf47
DEG_SPOP_SBC_1
32:36
VDSSS
SPOP
0.9921
More...
Q6DCA0
AMMECR1-like protein
DEG_SPOP_SBC_1
55:59
VDSSS
SPOP
0.9677
More...