DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VSTSS
Uniprot ID:
Q7L1W4
Source protein:
Volume-regulated anion channel subunit LRRC8D
Source gene:
LRRC8D
Class:
DEG_SPOP_SBC_1
Location:
238:242
E3 ligase:
SPOP
DEGRON score:
0.6957
ASA_SCORE:
72.32
COIL:
0.8384
CONS_SCORE:
0.6257
DSS_SCORE:
0.6751
HELIX:
0.0754
FCONS_SCORE:
1.1674
RIG_SCORE:
0.6138
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S242N
TCGA-12-0707
GBM
TCGA
VSTSS
DEG_SPOP_SBC_1
0.818
p.S242N
DO12634
GBM
ICGC
VSTSS
DEG_SPOP_SBC_1
0.818
p.T229A
TCGA-AP-A051
UCEC
TCGA
VSTSS
DEG_SPOP_SBC_1
0.0833
p.T229A
DO42673
UCEC
ICGC
VSTSS
DEG_SPOP_SBC_1
0.0833
p.Q232K
TCGA-CN-6010
HNSC
TCGA
VSTSS
DEG_SPOP_SBC_1
0.1667
p.Q232K
TCGA-D9-A148
SKCM
TCGA
VSTSS
DEG_SPOP_SBC_1
0.1667
p.Q232K
DO14766
HNSC
ICGC
VSTSS
DEG_SPOP_SBC_1
0.1667
p.Q232K
DO37971
SKCM
ICGC
VSTSS
DEG_SPOP_SBC_1
0.1667
p.P252Q
TCGA-EE-A183
SKCM
TCGA
VSTSS
DEG_SPOP_SBC_1
0.0556
p.P252Q
DO37715
SKCM
ICGC
VSTSS
DEG_SPOP_SBC_1
0.0556
p.G245R
TCGA-GN-A266
SKCM
TCGA
VSTSS
DEG_SPOP_SBC_1
0.25
p.G245R
DO37432
SKCM
ICGC
VSTSS
DEG_SPOP_SBC_1
0.25
p.Q232H
TCGA-KU-A6H7
HNSC
TCGA
VSTSS
DEG_SPOP_SBC_1
0.1667
p.Q232H
DO52089
HNSC
ICGC
VSTSS
DEG_SPOP_SBC_1
0.1667
p.S246I
DO229041
LICA
ICGC
VSTSS
DEG_SPOP_SBC_1
0.6667
p.S246N
DO35242
PACA
ICGC
VSTSS
DEG_SPOP_SBC_1
0.6667
Drug responses associated with LRRC8D mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P35716
Transcription factor SOX-11
DEG_SPOP_SBC_1
339:343
VSTSS
SPOP
0.9784
More...
P42684
Tyrosine-protein kinase ABL2
DEG_SPOP_SBC_1
816:820
VSTSS
SPOP
0.9961
More...
P54259
Atrophin-1
DEG_SPOP_SBC_1
38:42
VSTSS
SPOP
0.9947
More...
P57768
Sorting nexin-16
DEG_SPOP_SBC_1
33:37
VSTSS
SPOP
0.9979
More...
Q14149
MORC family CW-type zinc finger protein 3
DEG_SPOP_SBC_1
872:876
VSTSS
SPOP
0.9439
More...
Q68DE3
Basic helix-loop-helix domain-containing protein USF3
DEG_SPOP_SBC_1
776:780
VSTSS
SPOP
0.6894
More...
Q6PJT7
Zinc finger CCCH domain-containing protein 14
DEG_SPOP_SBC_1
131:135
VSTSS
SPOP
0.9971
More...
Q76L83
Putative Polycomb group protein ASXL2
DEG_SPOP_SBC_1
1333:1337
VSTSS
SPOP
0.961
More...
Q7L1W4
Volume-regulated anion channel subunit LRRC8D
DEG_SPOP_SBC_1
238:242
VSTSS
SPOP
0.6957
More...
Q86UE8
Serine/threonine-protein kinase tousled-like 2
DEG_SPOP_SBC_1
749:753
VSTSS
SPOP
0.9974
More...
Q8N3K9
Cardiomyopathy-associated protein 5
DEG_SPOP_SBC_1
1839:1843
VSTSS
SPOP
0.9049
More...
Q8NFU7
Methylcytosine dioxygenase TET1
DEG_SPOP_SBC_1
569:573
VSTSS
SPOP
0.9917
More...
Q8TF72
Protein Shroom3
DEG_SPOP_SBC_1
815:819
VSTSS
SPOP
0.9994
More...
Q9NZM3
Intersectin-2
DEG_SPOP_SBC_1
162:166
VSTSS
SPOP
0.9894
More...
Q9ULM3
YEATS domain-containing protein 2
DEG_SPOP_SBC_1
888:892
VSTSS
SPOP
0.9942
More...
Q9Y4D8
Probable E3 ubiquitin-protein ligase HECTD4
DEG_SPOP_SBC_1
3049:3053
VSTSS
SPOP
0.9533
More...
Q9BQE6
LBH domain-containing protein 1
DEG_SPOP_SBC_1
51:55
VSTSS
SPOP
0.5933
More...