DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VSTSS
Uniprot ID:
Q8NFU7
Source protein:
Methylcytosine dioxygenase TET1
Source gene:
TET1
Class:
DEG_SPOP_SBC_1
Location:
569:573
E3 ligase:
SPOP
DEGRON score:
0.9917
ASA_SCORE:
87.62
COIL:
0.9492
CONS_SCORE:
0.2843
DSS_SCORE:
0.3754
HELIX:
0.0246
FCONS_SCORE:
0.853
RIG_SCORE:
0.7584
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T563N
TCGA-13-1500
OV
TCGA
VSTSS
DEG_SPOP_SBC_1
0.1667
p.T563N
DO29698
OV
ICGC
VSTSS
DEG_SPOP_SBC_1
0.1667
p.P581L
TCGA-AA-A01C
COAD
TCGA
VSTSS
DEG_SPOP_SBC_1
0.1111
p.P581L
TCGA-AX-A1CE
UCEC
TCGA
VSTSS
DEG_SPOP_SBC_1
0.1111
p.P581L
DO7781
COAD
ICGC
VSTSS
DEG_SPOP_SBC_1
0.1111
p.P581L
DO228338
MALY
ICGC
VSTSS
DEG_SPOP_SBC_1
0.1111
p.P581L
DO42280
UCEC
ICGC
VSTSS
DEG_SPOP_SBC_1
0.1111
p.P581L
SIDM00948
Burkitt's Lymphoma
GDSC
VSTSS
DEG_SPOP_SBC_1
0.1111
p.P581L
ACH-002232
Lymphoma
CCLE
VSTSS
DEG_SPOP_SBC_1
0.1111
p.P581L
DG-75
haematopoietic_and_lymphoid_tissue
COSMIC
VSTSS
DEG_SPOP_SBC_1
0.1111
p.T559A
TCGA-AP-A0LD
UCEC
TCGA
VSTSS
DEG_SPOP_SBC_1
0.0556
p.T559A
DO41578
UCEC
ICGC
VSTSS
DEG_SPOP_SBC_1
0.0556
p.L583F
TCGA-D7-A6EZ
STAD
TCGA
VSTSS
DEG_SPOP_SBC_1
0.0556
p.L583F
DO50119
STAD
ICGC
VSTSS
DEG_SPOP_SBC_1
0.0556
p.V566L
DO229018
LICA
ICGC
VSTSS
DEG_SPOP_SBC_1
0.25
p.S570G
SIDM01090
Colorectal Carcinoma
GDSC
VSTSS
DEG_SPOP_SBC_1
0.5882
p.S570N
ACH-002287
Colon/Colorectal Cancer
CCLE
VSTSS
DEG_SPOP_SBC_1
0.5958
p.S570N
NCI-H630
large_intestine
COSMIC
VSTSS
DEG_SPOP_SBC_1
0.5958
Drug responses associated with TET1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P35716
Transcription factor SOX-11
DEG_SPOP_SBC_1
339:343
VSTSS
SPOP
0.9784
More...
P42684
Tyrosine-protein kinase ABL2
DEG_SPOP_SBC_1
816:820
VSTSS
SPOP
0.9961
More...
P54259
Atrophin-1
DEG_SPOP_SBC_1
38:42
VSTSS
SPOP
0.9947
More...
P57768
Sorting nexin-16
DEG_SPOP_SBC_1
33:37
VSTSS
SPOP
0.9979
More...
Q14149
MORC family CW-type zinc finger protein 3
DEG_SPOP_SBC_1
872:876
VSTSS
SPOP
0.9439
More...
Q68DE3
Basic helix-loop-helix domain-containing protein USF3
DEG_SPOP_SBC_1
776:780
VSTSS
SPOP
0.6894
More...
Q6PJT7
Zinc finger CCCH domain-containing protein 14
DEG_SPOP_SBC_1
131:135
VSTSS
SPOP
0.9971
More...
Q76L83
Putative Polycomb group protein ASXL2
DEG_SPOP_SBC_1
1333:1337
VSTSS
SPOP
0.961
More...
Q7L1W4
Volume-regulated anion channel subunit LRRC8D
DEG_SPOP_SBC_1
238:242
VSTSS
SPOP
0.6957
More...
Q86UE8
Serine/threonine-protein kinase tousled-like 2
DEG_SPOP_SBC_1
749:753
VSTSS
SPOP
0.9974
More...
Q8N3K9
Cardiomyopathy-associated protein 5
DEG_SPOP_SBC_1
1839:1843
VSTSS
SPOP
0.9049
More...
Q8NFU7
Methylcytosine dioxygenase TET1
DEG_SPOP_SBC_1
569:573
VSTSS
SPOP
0.9917
More...
Q8TF72
Protein Shroom3
DEG_SPOP_SBC_1
815:819
VSTSS
SPOP
0.9994
More...
Q9NZM3
Intersectin-2
DEG_SPOP_SBC_1
162:166
VSTSS
SPOP
0.9894
More...
Q9ULM3
YEATS domain-containing protein 2
DEG_SPOP_SBC_1
888:892
VSTSS
SPOP
0.9942
More...
Q9Y4D8
Probable E3 ubiquitin-protein ligase HECTD4
DEG_SPOP_SBC_1
3049:3053
VSTSS
SPOP
0.9533
More...
Q9BQE6
LBH domain-containing protein 1
DEG_SPOP_SBC_1
51:55
VSTSS
SPOP
0.5933
More...