DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VTSSS
Uniprot ID:
P19484
Source protein:
Transcription factor EB
Source gene:
TFEB
Class:
DEG_SPOP_SBC_1
Location:
207:211
E3 ligase:
SPOP
DEGRON score:
0.9601
ASA_SCORE:
72.8
COIL:
0.9082
CONS_SCORE:
0.7014
DSS_SCORE:
0.4167
HELIX:
0.0342
FCONS_SCORE:
1.0206
RIG_SCORE:
0.6964
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L204M
TCGA-86-7701
LUAD
TCGA
VTSSS
DEG_SPOP_SBC_1
0.25
p.R220Q
TCGA-CV-5966
HNSC
TCGA
VTSSS
DEG_SPOP_SBC_1
0.0833
p.R220Q
DO14950
HNSC
ICGC
VTSSS
DEG_SPOP_SBC_1
0.0833
p.A214V
TCGA-DD-A3A2
LIHC
TCGA
VTSSS
DEG_SPOP_SBC_1
0.25
p.A214V
DO44881
LIHC
ICGC
VTSSS
DEG_SPOP_SBC_1
0.25
p.S211Y
TCGA-FD-A6TC
BLCA
TCGA
VTSSS
DEG_SPOP_SBC_1
0.8231
p.S211F
DO52699
CLLE
ICGC
VTSSS
DEG_SPOP_SBC_1
0.9093
p.S211F
DO10809
EOPC
ICGC
VTSSS
DEG_SPOP_SBC_1
0.9093
p.R218H
DO228935
COCA
ICGC
VTSSS
DEG_SPOP_SBC_1
0.1389
p.S210F
DO224628
COCA
ICGC
VTSSS
DEG_SPOP_SBC_1
0.7982
p.D215E
DO229041
LICA
ICGC
VTSSS
DEG_SPOP_SBC_1
0.2222
p.H216D
DO23456
LINC
ICGC
VTSSS
DEG_SPOP_SBC_1
0.1944
p.T208A
DO229213
THCA
ICGC
VTSSS
DEG_SPOP_SBC_1
0.6028
p.V221I
SIDM01144
Gastric Carcinoma
GDSC
VTSSS
DEG_SPOP_SBC_1
0.0556
p.V221I
NCI-SNU-5
stomach
COSMIC
VTSSS
DEG_SPOP_SBC_1
0.0556
p.G220S
SIDM01228
Melanoma
GDSC
VTSSS
DEG_SPOP_SBC_1
0.0833
p.G220S
CHL-1
skin
COSMIC
VTSSS
DEG_SPOP_SBC_1
0.0833
p.P212A
SIDM01691
Chronic Myelogenous Leukemia
GDSC
VTSSS
DEG_SPOP_SBC_1
0.3056
p.S209N
ACH-000922
Leukemia
CCLE
VTSSS
DEG_SPOP_SBC_1
0.7069
p.G206S
ACH-000931
Skin Cancer
CCLE
VTSSS
DEG_SPOP_SBC_1
0.3056
p.G206S
ACH-001024
Skin Cancer
CCLE
VTSSS
DEG_SPOP_SBC_1
0.3056
p.G206S
CHL-1
skin
COSMIC
VTSSS
DEG_SPOP_SBC_1
0.3056
p.V207I
NCI-SNU-5
stomach
COSMIC
VTSSS
DEG_SPOP_SBC_1
0.7076
p.M203I
Hs766T
pancreas
COSMIC
VTSSS
DEG_SPOP_SBC_1
0.2222
p.H216R
IST-SL1
lung
COSMIC
VTSSS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with TFEB mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60318
Germinal-center associated nuclear protein
DEG_SPOP_SBC_1
197:201
VTSSS
SPOP
0.938
More...
P02533
Keratin, type I cytoskeletal 14
DEG_SPOP_SBC_1
441:445
VTSSS
SPOP
0.9845
More...
P15056
Serine/threonine-protein kinase B-raf
DEG_SPOP_SBC_1
120:124
VTSSS
SPOP
0.9734
More...
P19484
Transcription factor EB
DEG_SPOP_SBC_1
207:211
VTSSS
SPOP
0.9601
More...
Q14008
Cytoskeleton-associated protein 5
DEG_SPOP_SBC_1
2008:2012
VTSSS
SPOP
0.9659
More...
Q14161
ARF GTPase-activating protein GIT2
DEG_SPOP_SBC_1
554:558
VTSSS
SPOP
0.9992
More...
Q15911
Zinc finger homeobox protein 3
DEG_SPOP_SBC_1
3641:3645
VTSSS
SPOP
0.8527
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3548:3552
VTSSS
SPOP
0.9001
More...
Q7Z5P9
Mucin-19
DEG_SPOP_SBC_1
442:446
VTSSS
SPOP
0.9354
More...
Q8IY22
C-Maf-inducing protein
DEG_SPOP_SBC_1
3:7
VTSSS
SPOP
0.9749
More...
Q8TBK6
Zinc finger CCHC domain-containing protein 10
DEG_SPOP_SBC_1
108:112
VTSSS
SPOP
0.9792
More...
Q8TF40
Folliculin-interacting protein 1
DEG_SPOP_SBC_1
104:108
VTSSS
SPOP
0.9551
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
3897:3901
VTSSS
SPOP
0.9951
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
4932:4936
VTSSS
SPOP
0.8363
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7283:7287
VTSSS
SPOP
0.9977
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
8158:8162
VTSSS
SPOP
0.9995
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
11046:11050
VTSSS
SPOP
0.9225
More...
Q92622
Run domain Beclin-1-interacting and cysteine-rich domain-containing protein
DEG_SPOP_SBC_1
565:569
VTSSS
SPOP
0.9982
More...
Q9ULT8
E3 ubiquitin-protein ligase HECTD1
DEG_SPOP_SBC_1
1615:1619
VTSSS
SPOP
0.8983
More...
Q9UPP1
Histone lysine demethylase PHF8
DEG_SPOP_SBC_1
965:969
VTSSS
SPOP
0.9734
More...
A6NNH2
Protein FAM90A27P
DEG_SPOP_SBC_1
449:453
VTSSS
SPOP
0.9881
More...