DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VTTST
Uniprot ID:
A5YKK6
Source protein:
CCR4-NOT transcription complex subunit 1
Source gene:
CNOT1
Class:
DEG_SPOP_SBC_1
Location:
1040:1044
E3 ligase:
SPOP
DEGRON score:
0.9972
ASA_SCORE:
77.6
COIL:
0.817
CONS_SCORE:
0.25
DSS_SCORE:
0.3324
HELIX:
0.0458
FCONS_SCORE:
1.0218
RIG_SCORE:
0.7507
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T1047N
TCGA-DU-6392
LGG
TCGA
VTTST
DEG_SPOP_SBC_1
0.25
p.S1037R
TCGA-L5-A8NE
ESCA
TCGA
VTTST
DEG_SPOP_SBC_1
0.25
p.T1041A
TCGA-VS-A94Z
CESC
TCGA
VTTST
DEG_SPOP_SBC_1
0.6028
p.T1036A
DO51634
CESC
ICGC
VTTST
DEG_SPOP_SBC_1
0.2222
p.T1042N
DO22237
LGG
ICGC
VTTST
DEG_SPOP_SBC_1
0.7055
p.T1053N
DO229037
LICA
ICGC
VTTST
DEG_SPOP_SBC_1
0.5278
p.T1050S
DO26830
LUSC
ICGC
VTTST
DEG_SPOP_SBC_1
0.2778
p.T1045I
SIDM00185
Melanoma
GDSC
VTTST
DEG_SPOP_SBC_1
0.3056
p.T1045I
ACH-002152
Skin Cancer
CCLE
VTTST
DEG_SPOP_SBC_1
0.3056
p.T1045I
LB2518-MEL
skin
COSMIC
VTTST
DEG_SPOP_SBC_1
0.3056
p.A1030G
SIDM01577
Plasma Cell Myeloma
GDSC
VTTST
DEG_SPOP_SBC_1
0.0556
p.A1030G
ACH-000889
Myeloma
CCLE
VTTST
DEG_SPOP_SBC_1
0.0556
p.T1040I
LB2518-MEL
skin
COSMIC
VTTST
DEG_SPOP_SBC_1
0.7078
Drug responses associated with CNOT1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A5YKK6
CCR4-NOT transcription complex subunit 1
DEG_SPOP_SBC_1
1040:1044
VTTST
SPOP
0.9972
More...
O95274
Ly6/PLAUR domain-containing protein 3
DEG_SPOP_SBC_1
255:259
VTTST
SPOP
0.8718
More...
P08670
Vimentin
DEG_SPOP_SBC_1
31:35
VTTST
SPOP
0.9992
More...
P12270
Nucleoprotein TPR
DEG_SPOP_SBC_1
2244:2248
VTTST
SPOP
0.5533
More...
P15822
Zinc finger protein 40
DEG_SPOP_SBC_1
714:718
VTTST
SPOP
0.6604
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2256:2260
VTTST
SPOP
0.9908
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3362:3366
VTTST
SPOP
0.9176
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4093:4097
VTTST
SPOP
0.9149
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
365:369
VTTST
SPOP
0.9781
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3430:3434
VTTST
SPOP
0.9177
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
4862:4866
VTTST
SPOP
0.9247
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
266:270
VTTST
SPOP
0.9076
More...
Q9H2Y7
Zinc finger protein 106
DEG_SPOP_SBC_1
1396:1400
VTTST
SPOP
0.9451
More...
Q9HAR2
Adhesion G protein-coupled receptor L3
DEG_SPOP_SBC_1
1372:1376
VTTST
SPOP
0.9817
More...
Q9ULV0
Unconventional myosin-Vb
DEG_SPOP_SBC_1
950:954
VTTST
SPOP
0.7192
More...
Q2M2H8
Probable maltase-glucoamylase 2
DEG_SPOP_SBC_1
1991:1995
VTTST
SPOP
0.8266
More...