DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VTTST
Uniprot ID:
Q9ULV0
Source protein:
Unconventional myosin-Vb
Source gene:
MYO5B
Class:
DEG_SPOP_SBC_1
Location:
950:954
E3 ligase:
SPOP
DEGRON score:
0.7192
ASA_SCORE:
77.46
COIL:
0.5728
CONS_SCORE:
0.2397
DSS_SCORE:
0.332
HELIX:
0.4038
FCONS_SCORE:
0.6859
RIG_SCORE:
0.766
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M957I
TCGA-49-6744
LUAD
TCGA
VTTST
DEG_SPOP_SBC_1
0.25
p.E958K
TCGA-61-2113
OV
TCGA
VTTST
DEG_SPOP_SBC_1
0.2222
p.R961W
TCGA-EJ-A7NG
PRAD
TCGA
VTTST
DEG_SPOP_SBC_1
0.1389
p.R961W
SIDM00301
Pancreatic Carcinoma
GDSC
VTTST
DEG_SPOP_SBC_1
0.1389
p.R961W
KP-4
pancreas
COSMIC
VTTST
DEG_SPOP_SBC_1
0.1389
p.V959I
TCGA-ER-A2NC
SKCM
TCGA
VTTST
DEG_SPOP_SBC_1
0.1944
p.V959I
SIDM00338
Acute Myeloid Leukemia
GDSC
VTTST
DEG_SPOP_SBC_1
0.1944
p.V959I
ACH-000439
Leukemia
CCLE
VTTST
DEG_SPOP_SBC_1
0.1944
p.V959I
ME-1
haematopoietic_and_lymphoid_tissue
COSMIC
VTTST
DEG_SPOP_SBC_1
0.1944
p.S949Y
TCGA-GN-A266
SKCM
TCGA
VTTST
DEG_SPOP_SBC_1
0.75
p.S948A
DO3055
BRCA
ICGC
VTTST
DEG_SPOP_SBC_1
0.2778
p.S943Y
DO8264
COAD
ICGC
VTTST
DEG_SPOP_SBC_1
0.5833
p.S943Y
DO41235
UCEC
ICGC
VTTST
DEG_SPOP_SBC_1
0.5833
p.A953V
DO232761
PBCA
ICGC
VTTST
DEG_SPOP_SBC_1
0.6936
p.K942R
SIDM00535
Chondrosarcoma
GDSC
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
SIDM00547
Non-Small Cell Lung Carcinoma
GDSC
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
SIDM00364
B-Lymphoblastic Leukemia
GDSC
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
SIDM01473
Plasma Cell Myeloma
GDSC
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
ACH-000438
Lung Cancer
CCLE
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
ACH-000541
Myeloma
CCLE
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
ACH-001184
Sarcoma
CCLE
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
ACH-001515
Cervical Cancer
CCLE
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
ACH-001519
Bone Cancer
CCLE
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
ACH-002059
Leukemia
CCLE
VTTST
DEG_SPOP_SBC_1
0.2222
p.K942R
ACH-002800
Unknown
CCLE
VTTST
DEG_SPOP_SBC_1
0.2222
p.E960K
SIDM00263
Ewing's Sarcoma
GDSC
VTTST
DEG_SPOP_SBC_1
0.1667
p.E960K
ACH-002106
Bone Cancer
CCLE
VTTST
DEG_SPOP_SBC_1
0.1667
p.E960K
ES5
bone
COSMIC
VTTST
DEG_SPOP_SBC_1
0.1667
p.V950M
SIDM00839
Colorectal Carcinoma
GDSC
VTTST
DEG_SPOP_SBC_1
0.7208
p.V950M
LoVo
large_intestine
COSMIC
VTTST
DEG_SPOP_SBC_1
0.7208
Drug responses associated with MYO5B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A5YKK6
CCR4-NOT transcription complex subunit 1
DEG_SPOP_SBC_1
1040:1044
VTTST
SPOP
0.9972
More...
O95274
Ly6/PLAUR domain-containing protein 3
DEG_SPOP_SBC_1
255:259
VTTST
SPOP
0.8718
More...
P08670
Vimentin
DEG_SPOP_SBC_1
31:35
VTTST
SPOP
0.9992
More...
P12270
Nucleoprotein TPR
DEG_SPOP_SBC_1
2244:2248
VTTST
SPOP
0.5533
More...
P15822
Zinc finger protein 40
DEG_SPOP_SBC_1
714:718
VTTST
SPOP
0.6604
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2256:2260
VTTST
SPOP
0.9908
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3362:3366
VTTST
SPOP
0.9176
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4093:4097
VTTST
SPOP
0.9149
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
365:369
VTTST
SPOP
0.9781
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3430:3434
VTTST
SPOP
0.9177
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
4862:4866
VTTST
SPOP
0.9247
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
266:270
VTTST
SPOP
0.9076
More...
Q9H2Y7
Zinc finger protein 106
DEG_SPOP_SBC_1
1396:1400
VTTST
SPOP
0.9451
More...
Q9HAR2
Adhesion G protein-coupled receptor L3
DEG_SPOP_SBC_1
1372:1376
VTTST
SPOP
0.9817
More...
Q9ULV0
Unconventional myosin-Vb
DEG_SPOP_SBC_1
950:954
VTTST
SPOP
0.7192
More...
Q2M2H8
Probable maltase-glucoamylase 2
DEG_SPOP_SBC_1
1991:1995
VTTST
SPOP
0.8266
More...