DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
AASTS
Uniprot ID:
Q8IYG6
Source protein:
Leucine-rich repeat-containing protein 56
Source gene:
LRRC56
Class:
DEG_SPOP_SBC_1
Location:
363:367
E3 ligase:
SPOP
DEGRON score:
0.8439
ASA_SCORE:
73.3
COIL:
0.868
CONS_SCORE:
0.3138
DSS_SCORE:
0.906
HELIX:
0.0398
FCONS_SCORE:
0.9366
RIG_SCORE:
0.4951
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D372N
TCGA-36-2534
OV
TCGA
AASTS
DEG_SPOP_SBC_1
0.1944
p.D372N
DO29046
OV
ICGC
AASTS
DEG_SPOP_SBC_1
0.1944
p.D372Y
TCGA-64-1676
LUAD
TCGA
AASTS
DEG_SPOP_SBC_1
0.1944
p.D372Y
DO23629
LUAD
ICGC
AASTS
DEG_SPOP_SBC_1
0.1944
p.P355S
TCGA-AJ-A3OJ
UCEC
TCGA
AASTS
DEG_SPOP_SBC_1
0.1111
p.P355S
TCGA-B5-A1MX
UCEC
TCGA
AASTS
DEG_SPOP_SBC_1
0.1111
p.P355S
DO41999
UCEC
ICGC
AASTS
DEG_SPOP_SBC_1
0.1111
p.P355S
DO42753
UCEC
ICGC
AASTS
DEG_SPOP_SBC_1
0.1111
p.Q353L
TCGA-CC-A7IK
LIHC
TCGA
AASTS
DEG_SPOP_SBC_1
0.0556
p.Q353L
DO52184
LIHC
ICGC
AASTS
DEG_SPOP_SBC_1
0.0556
p.P369T
TCGA-D3-A1Q6
SKCM
TCGA
AASTS
DEG_SPOP_SBC_1
0.2778
p.P369T
DO37450
SKCM
ICGC
AASTS
DEG_SPOP_SBC_1
0.2778
p.L354V
TCGA-EL-A3D0
THCA
TCGA
AASTS
DEG_SPOP_SBC_1
0.0833
p.L354V
DO48127
THCA
ICGC
AASTS
DEG_SPOP_SBC_1
0.0833
p.T368I
DO48328
ESCA
ICGC
AASTS
DEG_SPOP_SBC_1
0.3056
p.P362L
DO233089
GACA
ICGC
AASTS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with LRRC56 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AASTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15391
Transcription factor YY2
DEG_SPOP_SBC_1
127:131
AASTS
SPOP
0.8632
More...
O15504
Nucleoporin NUP42
DEG_SPOP_SBC_1
274:278
AASTS
SPOP
0.5936
More...
O43670
BUB3-interacting and GLEBS motif-containing protein ZNF207
DEG_SPOP_SBC_1
122:126
AASTS
SPOP
0.9939
More...
O75113
NEDD4-binding protein 1
DEG_SPOP_SBC_1
804:808
AASTS
SPOP
0.9913
More...
O95259
Potassium voltage-gated channel subfamily H member 1
DEG_SPOP_SBC_1
802:806
AASTS
SPOP
0.8742
More...
O95721
Synaptosomal-associated protein 29
DEG_SPOP_SBC_1
57:61
AASTS
SPOP
0.8495
More...
P11473
Vitamin D3 receptor
DEG_SPOP_SBC_1
5:9
AASTS
SPOP
0.7318
More...
P18827
Syndecan-1
DEG_SPOP_SBC_1
87:91
AASTS
SPOP
0.9596
More...
P46821
Microtubule-associated protein 1B
DEG_SPOP_SBC_1
21:25
AASTS
SPOP
0.9238
More...
Q13049
E3 ubiquitin-protein ligase TRIM32
DEG_SPOP_SBC_1
315:319
AASTS
SPOP
0.925
More...
Q14669
E3 ubiquitin-protein ligase TRIP12
DEG_SPOP_SBC_1
199:203
AASTS
SPOP
0.9879
More...
Q2KHT3
Protein CLEC16A
DEG_SPOP_SBC_1
450:454
AASTS
SPOP
0.6135
More...
Q6VMQ6
Activating transcription factor 7-interacting protein 1
DEG_SPOP_SBC_1
1155:1159
AASTS
SPOP
0.7759
More...
Q8IYG6
Leucine-rich repeat-containing protein 56
DEG_SPOP_SBC_1
363:367
AASTS
SPOP
0.8439
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
2095:2099
AASTS
SPOP
0.5839
More...
Q9BWF3
RNA-binding protein 4
DEG_SPOP_SBC_1
298:302
AASTS
SPOP
0.9032
More...
Q9HC35
Echinoderm microtubule-associated protein-like 4
DEG_SPOP_SBC_1
14:18
AASTS
SPOP
0.9981
More...
Q9P2R6
Arginine-glutamic acid dipeptide repeats protein
DEG_SPOP_SBC_1
616:620
AASTS
SPOP
0.997
More...
Q9UJX2
Cell division cycle protein 23 homolog
DEG_SPOP_SBC_1
2:6
AASTS
SPOP
0.5243
More...
O95081
Arf-GAP domain and FG repeat-containing protein 2
DEG_SPOP_SBC_1
189:193
AASTS
SPOP
0.9166
More...
Q8TC56
Golgi associated RAB2 interactor protein 3
DEG_SPOP_SBC_1
348:352
AASTS
SPOP
0.9521
More...
A6NL46
Putative UPF0607 protein ENSP00000332738
DEG_SPOP_SBC_1
108:112
AASTS
SPOP
0.9403
More...
A8MUA0
Putative UPF0607 protein ENSP00000381514
DEG_SPOP_SBC_1
109:113
AASTS
SPOP
0.7629
More...
A8MV72
Putative UPF0607 protein ENSP00000382826
DEG_SPOP_SBC_1
79:83
AASTS
SPOP
0.8388
More...
A8MX80
Putative UPF0607 protein ENSP00000383144
DEG_SPOP_SBC_1
109:113
AASTS
SPOP
0.6735
More...
Q5PR19
Putative UPF0607 protein LOC392364
DEG_SPOP_SBC_1
146:150
AASTS
SPOP
0.6539
More...
Q86XN7
Proline and serine-rich protein 1
DEG_SPOP_SBC_1
414:418
AASTS
SPOP
0.97
More...
Q8N9G6
Putative UPF0607 protein FLJ37424
DEG_SPOP_SBC_1
109:113
AASTS
SPOP
0.878
More...